RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA734348", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 7 ✖

tax_kingdom 1

  • Metazoa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA734348 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3269267 3269267 PRJNA734348_P_NODE_28823_length_362_cov_4.737024_g28128_i0 PRJNA734348 28823 362 4.737024 17.14802688 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 652 0   NTclustered gi|1124902734|gb|AY812498.2| 6182 g28128 i0 99.171 99.9447513812155 362 3 100 0 1 362 1074 713 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 36180 652 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
7097085 7097085 PRJNA734348_P_NODE_50406_length_289_cov_2.671296_g49709_i0 PRJNA734348 50406 289 2.671296 7.72004544 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 329 1.1e-85   NTclustered gi|60698656|gb|AY915745.1| 6182 g49709 i0 97.423 9.41176470588235 194 4 67 1 1 194 275 467 Schistosoma japonicum SJCHGC09658 protein mRNA, partial cds blastn 2720 329 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
11401092 11401092 PRJNA734348_P_NODE_64929_length_274_cov_5.716418_g64232_i0 PRJNA734348 64929 274 5.716418 15.66298532 Plagiostomum 84130 Platyhelminthes Platyhelminthes 145 4.04e-30   NTclustered gi|1587089599|gb|MG882058.1| 2544880 g64232 i0 86.232 47.3175182481752 138 13 49 5 2 136 1063 929 Plagiostomum sp. n. MW-2019 isolate XK2 28S ribosomal RNA gene, partial sequence blastn 12965 145 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Prolecithophora Plagiostomidae Plagiostomum Plagiostomum sp. n. MW-2019
13472702 13472702 PRJNA734348_P_NODE_75931_length_264_cov_1.612565_g75233_i0 PRJNA734348 75931 264 1.612565 4.2571716 Diplorchis hangzhouensis 1131906 Platyhelminthes Platyhelminthes 54.7 0.007   NTclustered gi|379771686|gb|JQ038227.1| 1131906 g75233 i0 100 0.109848484848485 29 0 11 0 98 126 5361 5389 Diplorchis hangzhouensis mitochondrion sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Diplorchis Diplorchis hangzhouensis
16020898 16020898 PRJNA734348_P_NODE_45273_length_299_cov_3.500000_g44576_i0 PRJNA734348 45273 299 3.5 10.465 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 477 3.8699999999999984e-130   NTclustered gi|56757963|gb|AY815390.1| 6182 g44576 i0 95.638 128.200668896321 298 11 100 2 1 297 1768 2064 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 38332 477 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
19845944 19845944 PRJNA734348_P_NODE_83016_length_258_cov_1.502703_g82318_i0 PRJNA734348 83016 258 1.502703 3.87697374 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.002   NTclustered gi|690474727|emb|LN015249.1| 99802 g82318 i0 100 0.116279069767442 30 0 12 0 223 252 5608 5637 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0015041 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
29420677 29420677 PRJNA734348_P_NODE_95289_length_250_cov_1.666667_g94591_i0 PRJNA734348 95289 250 1.666667 4.1666675 Schistosoma mattheei 31246 Platyhelminthes Platyhelminthes 57.8 1.91e-7   NR VDP78995.1 31246 g94591 i0 42.7 1.812 75 42 90 1 3 227 136 209 VDP78995.1 unnamed protein product, partial [Schistosoma mattheei] diamond 453 57.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mattheei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;