RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA734348", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA734348 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26640876 26640876 PRJNA734348_P_NODE_146721_length_213_cov_4.485714_g146023_i0 PRJNA734348 146721 213 4.485714 9.55457082 Lentisphaerota bacterium 1932692 Bacteria Bacteria 102 1.72e-26   NR NLG00362.1 1932692 g146023 i0 94 0.704225352112676 50 3 70.4 0 150 1 1 50 NLG00362.1 hypothetical protein [Lentisphaerota bacterium] diamond 150 102 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
27841973 27841973 PRJNA734348_P_NODE_106844_length_247_cov_1.591954_g106146_i0 PRJNA734348 106844 247 1.591954 3.93212638 Victivallis vadensis 172901 Bacteria Bacteria 88.6 2.92e-18   NR WP_302453942.1 172901 g106146 i0 60.8 1.79757085020243 74 27 88.7 2 1 219 479 551 WP_302453942.1 hypothetical protein, partial [Victivallis vadensis] diamond 444 88.6 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis vadensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;