contig_metadata
18 rows where bioproject = "PRJNA734348", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10125475 | 10125475 | PRJNA734348_P_NODE_128048_length_242_cov_0.911243_g127350_i0 | PRJNA734348 | 128048 | 242 | 0.911243 | 2.20520806 | Rubrivirga | 1434037 | Bacteria | Bacteria | 202 | 2.0499999999999998e-47 | NTclustered | gi|2874254104|emb|OY970187.1| | 2838334 | g127350 | i0 | 81.893 | 99.4669421487603 | 243 | 41 | 99 | 3 | 2 | 242 | 2465771 | 2466012 | MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 | blastn | 24071 | 202 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rubricoccaceae | Rubricoccaceae bacterium | ||
| 12197877 | 12197877 | PRJNA734348_P_NODE_58110_length_281_cov_2.557692_g57413_i0 | PRJNA734348 | 58110 | 281 | 2.557692 | 7.18711452 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 147 | 8.08e-43 | NR | MBE2186048.1 | 2306054 | g57413 | i0 | 73.1 | 0.99288256227758 | 93 | 25 | 99.3 | 0 | 3 | 281 | 63 | 155 | MBE2186048.1 elongation factor P [Rhodothermales bacterium] | diamond | 279 | 147 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 13470923 | 13470923 | PRJNA734348_P_NODE_123031_length_243_cov_1.529412_g122333_i0 | PRJNA734348 | 123031 | 243 | 1.529412 | 3.71647116 | Rubrivirga sp. IMCC45206 | 3391614 | Bacteria | Bacteria | 195 | 3.4399999999999997e-45 | NTclustered | gi|2890849321|gb|CP177357.1| | 3391614 | g122333 | i0 | 83.028 | 25.1522633744856 | 218 | 33 | 89 | 4 | 4 | 219 | 2083496 | 2083281 | Rubrivirga sp. IMCC45206 chromosome, complete genome | blastn | 6112 | 195 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rubricoccaceae | Rubrivirga | Rubrivirga sp. IMCC45206 | |
| 14745803 | 14745803 | PRJNA734348_P_NODE_10812_length_706_cov_1.382306_g10178_i0 | PRJNA734348 | 10812 | 706 | 1.382306 | 9.75908036 | Rubricoccaceae bacterium | 2838334 | Bacteria | Bacteria | 968 | 0 | NTclustered | gi|2874254104|emb|OY970187.1| | 2838334 | g10178 | i0 | 92.794 | 216.171388101983 | 680 | 32 | 96 | 4 | 27 | 706 | 1308742 | 1308080 | MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 | blastn | 152617 | 968 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rubricoccaceae | Rubricoccaceae bacterium | ||
| 15226030 | 15226030 | PRJNA734348_P_NODE_74952_length_265_cov_1.572917_g74254_i0 | PRJNA734348 | 74952 | 265 | 1.572917 | 4.16823005 | Rhodothermales | 1853224 | Bacteria | Bacteria | 294 | 3.64e-75 | NTclustered | gi|2844596544|gb|CP172416.1| | 29549 | g74254 | i0 | 86.94 | 111.283018867925 | 268 | 28 | 100 | 6 | 1 | 265 | 3095284 | 3095547 | Rhodothermus marinus strain ISCAR-493 chromosome | blastn | 29490 | 296 | 0.993243243243243 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermaceae | Rhodothermus | Rhodothermus marinus | |
| 16019536 | 16019536 | PRJNA734348_P_NODE_114693_length_245_cov_1.738372_g113995_i0 | PRJNA734348 | 114693 | 245 | 1.738372 | 4.2590114 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 112 | 1.03e-26 | NR | HYE58200.1 | 2306054 | g113995 | i0 | 65.5 | 2.05714285714286 | 84 | 26 | 99.2 | 1 | 243 | 1 | 342 | 425 | HYE58200.1 alpha-amylase family glycosyl hydrolase [Rhodothermales bacterium] | diamond | 504 | 112 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 16019859 | 16019859 | PRJNA734348_P_NODE_132253_length_241_cov_0.916667_g131555_i0 | PRJNA734348 | 132253 | 241 | 0.916667 | 2.20916747 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 74.3 | 1.66e-13 | NR | WP_012845039.1 | 29549 | g131555 | i0 | 50 | 2.98755186721992 | 80 | 40 | 99.6 | 0 | 241 | 2 | 134 | 213 | WP_012845039.1 M23 family metallopeptidase [Rhodothermus marinus] | diamond | 720 | 74.7 | 0.994645247657296 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermaceae | Rhodothermus | Rhodothermus marinus | |
| 16499821 | 16499821 | PRJNA734348_P_NODE_109913_length_246_cov_3.352601_g109215_i0 | PRJNA734348 | 109913 | 246 | 3.352601 | 8.24739846 | Rhodothermales | 1853224 | Bacteria | Bacteria | 189 | 1.62e-43 | NTclustered | gi|1167574847|gb|CP020382.1| | 1779382 | g109215 | i0 | 80.723 | 8.60975609756098 | 249 | 42 | 100 | 6 | 1 | 246 | 4650755 | 4650510 | Rhodothermaceae bacterium RA chromosome, complete genome | blastn | 2118 | 189 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermaceae | Rhodothermaceae bacterium RA | ||
| 17295343 | 17295343 | PRJNA734348_P_NODE_131134_length_241_cov_1.761905_g130436_i0 | PRJNA734348 | 131134 | 241 | 1.761905 | 4.24619105 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 143 | 9.71e-38 | NR | MBE2187401.1 | 2306054 | g130436 | i0 | 91.1 | 0.983402489626556 | 79 | 7 | 98.3 | 0 | 1 | 237 | 257 | 335 | MBE2187401.1 DNA primase [Rhodothermales bacterium] | diamond | 237 | 143 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 21599524 | 21599524 | PRJNA734348_P_NODE_5237_length_1156_cov_3.706371_g4794_i0 | PRJNA734348 | 5237 | 1156 | 3.706371 | 42.84564876 | Rhodothermales | 1853224 | Bacteria | Bacteria | 1347 | 0 | NTclustered | gi|1167574847|gb|CP020382.1| | 1779382 | g4794 | i0 | 87.778 | 330.730968858131 | 1170 | 120 | 100 | 21 | 1 | 1156 | 2905650 | 2906810 | Rhodothermaceae bacterium RA chromosome, complete genome | blastn | 382325 | 1347 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermaceae | Rhodothermaceae bacterium RA | ||
| 22874971 | 22874971 | PRJNA734348_P_NODE_78358_length_262_cov_1.544974_g77660_i0 | PRJNA734348 | 78358 | 262 | 1.544974 | 4.04783188 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 155 | 1.22e-45 | NR | MBE2186457.1 | 2306054 | g77660 | i0 | 84.9 | 0.984732824427481 | 86 | 13 | 98.5 | 0 | 259 | 2 | 1 | 86 | MBE2186457.1 LON peptidase substrate-binding domain-containing protein [Rhodothermales bacterium] | diamond | 258 | 155 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 24944785 | 24944785 | PRJNA734348_P_NODE_46260_length_296_cov_4.417040_g45563_i0 | PRJNA734348 | 46260 | 296 | 4.41704 | 13.0744384 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 189 | 4.299999999999999e-56 | NR | MBE2186143.1 | 2306054 | g45563 | i0 | 87.4 | 1.04391891891892 | 103 | 8 | 99.3 | 1 | 296 | 3 | 14 | 116 | MBE2186143.1 3-isopropylmalate dehydratase large subunit [Rhodothermales bacterium] | diamond | 309 | 189 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 27905017 | 27905017 | PRJNA734348_P_NODE_127265_length_242_cov_1.455621_g126567_i0 | PRJNA734348 | 127265 | 242 | 1.455621 | 3.52260282 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 89 | 9.64e-19 | NR | HEX7071637.1 | 2306054 | g126567 | i0 | 51.3 | 2.90082644628099 | 78 | 38 | 96.7 | 0 | 8 | 241 | 177 | 254 | HEX7071637.1 hypothetical protein [Rhodothermales bacterium] | diamond | 702 | 89 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 28442189 | 28442189 | PRJNA734348_P_NODE_127846_length_242_cov_0.911243_g127148_i0 | PRJNA734348 | 127846 | 242 | 0.911243 | 2.20520806 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 115 | 1e-27 | NR | HYE58953.1 | 2306054 | g127148 | i0 | 63.8 | 0.991735537190083 | 80 | 29 | 99.2 | 0 | 2 | 241 | 440 | 519 | HYE58953.1 single-stranded-DNA-specific exonuclease RecJ [Rhodothermales bacterium] | diamond | 240 | 115 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 28537008 | 28537008 | PRJNA734348_P_NODE_41427_length_310_cov_2.713080_g40731_i0 | PRJNA734348 | 41427 | 310 | 2.71308 | 8.410548 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 169 | 2.32e-49 | NR | MBE2185484.1 | 2306054 | g40731 | i0 | 75.9 | 1.04516129032258 | 108 | 19 | 97.7 | 1 | 305 | 3 | 140 | 247 | MBE2185484.1 GMP synthase [Rhodothermales bacterium] | diamond | 324 | 169 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 28726215 | 28726215 | PRJNA734348_P_NODE_32947_length_339_cov_2.428571_g32251_i0 | PRJNA734348 | 32947 | 339 | 2.428571 | 8.23285569 | Rubrivirga sp. SAORIC476 | 1961794 | Bacteria | Bacteria | 80.5 | 6.23e-15 | NR | WP_095513182.1 | 1961794 | g32251 | i0 | 44.2 | 1.2212389380531 | 138 | 46 | 99.1 | 2 | 337 | 2 | 107 | 239 | WP_095513182.1 beta strand repeat-containing protein [Rubrivirga sp. SAORIC476] | diamond | 414 | 80.5 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rubricoccaceae | Rubrivirga | Rubrivirga sp. SAORIC476 | |
| 30494888 | 30494888 | PRJNA734348_P_NODE_144733_length_226_cov_2.013072_g144035_i0 | PRJNA734348 | 144733 | 226 | 2.013072 | 4.54954272 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 60.8 | 3.87e-9 | NR | MDX1548334.1 | 2306054 | g144035 | i0 | 47.8 | 0.915929203539823 | 69 | 28 | 91.6 | 1 | 216 | 10 | 9 | 69 | MDX1548334.1 alpha/beta fold hydrolase [Rhodothermales bacterium] | diamond | 207 | 60.8 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 32391994 | 32391994 | PRJNA734348_P_NODE_141219_length_230_cov_3.496815_g140521_i0 | PRJNA734348 | 141219 | 230 | 3.496815 | 8.0426745 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 91.3 | 2.28e-19 | NR | MBE2187625.1 | 2306054 | g140521 | i0 | 87 | 0.704347826086957 | 54 | 7 | 70.4 | 0 | 2 | 163 | 252 | 305 | MBE2187625.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodothermales bacterium] | diamond | 162 | 91.3 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;