RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA734348", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 4 ✖

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA734348 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10920937 10920937 PRJNA734348_P_NODE_115529_length_245_cov_0.895349_g114831_i0 PRJNA734348 115529 245 0.895349 2.19360505 Thecamonas trahens 529818 Root_unresolved Root_unresolved 141 4.59e-29   NTclustered gi|923125065|ref|XM_013900547.1| 461836 g114831 i0 89.286 15.5959183673469 112 12 46 0 134 245 859 748 Thecamonas trahens ATCC 50062 60S ribosomal protein L3 (AMSG_07514), mRNA blastn 3821 141 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
10923018 10923018 PRJNA734348_P_NODE_89629_length_252_cov_2.620112_g88931_i0 PRJNA734348 89629 252 2.620112 6.60268224 Thecamonas trahens 529818 Root_unresolved Root_unresolved 67.6 8.16e-7   NTclustered gi|923129552|ref|XM_013902788.1| 461836 g88931 i0 89.091 1.25 55 4 26 2 110 163 348 295 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_04567), partial mRNA blastn 315 67.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
24944291 24944291 PRJNA734348_P_NODE_23360_length_407_cov_2.961078_g22665_i0 PRJNA734348 23360 407 2.961078 12.05158746 Karpovia croatica 2925417 Root_unresolved Root_unresolved 102 3.82e-17   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g22665 i0 87.64 14.5970515970516 89 9 22 2 319 407 6020 6106 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5941 102 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
26988961 26988961 PRJNA734348_P_NODE_83362_length_257_cov_4.679348_g82664_i0 PRJNA734348 83362 257 4.679348 12.02592436 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 62.4 5.17e-9   NR XP_013761132.1 461836 g82664 i0 55.9 0.688715953307393 59 22 64.2 1 5 169 272 330 XP_013761132.1 uncharacterized protein AMSG_02103 [Thecamonas trahens ATCC 50062] diamond 177 62.4 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;