RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA734348", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA734348 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4546798 4546798 PRJNA734348_P_NODE_47364_length_294_cov_1.393665_g46667_i0 PRJNA734348 47364 294 1.393665 4.0973751 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 521 1.7299999999999995e-143   NTclustered gi|300078496|gb|GU001158.1| 5778 g46667 i0 98.639 5.56122448979592 294 4 100 0 1 294 1615 1322 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1635 521 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8371061 8371061 PRJNA734348_P_NODE_21427_length_430_cov_3.588235_g20735_i0 PRJNA734348 21427 430 3.588235 15.4294105 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 778 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g20735 i0 99.302 46.4116279069767 430 3 100 0 1 430 2887 2458 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19957 778 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10922384 10922384 PRJNA734348_P_NODE_53309_length_286_cov_2.474178_g52612_i0 PRJNA734348 53309 286 2.474178 7.07614908 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 213 1.15e-50   NTclustered gi|292559443|ref|NC_013986.1| 5778 g52612 i0 80.986 33.3951048951049 284 41 98 9 1 279 25615 25890 Hartmannella vermiformis mitochondrion, complete genome blastn 9551 213 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13950803 13950803 PRJNA734348_P_NODE_126071_length_242_cov_5.076923_g125373_i0 PRJNA734348 126071 242 5.076923 12.28615366 Vermamoeba 1260114 Tubulinea other_Eukaryota 425 1.11e-114   NTclustered gi|909719645|gb|KT185625.1| 5778 g125373 i0 98.347 91.9256198347107 242 4 100 0 1 242 5140 4899 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 22246 425 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17294991 17294991 PRJNA734348_P_NODE_110994_length_246_cov_1.421965_g110296_i0 PRJNA734348 110994 246 1.421965 3.4980339 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 405 1.48e-108   NTclustered gi|909719645|gb|KT185625.1| 5778 g110296 i0 96.341 3.16666666666667 246 9 100 0 1 246 7057 6812 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 779 405 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18569150 18569150 PRJNA734348_P_NODE_136415_length_237_cov_8.060976_g135717_i0 PRJNA734348 136415 237 8.060976 19.10451312 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 427 3.03e-115   NTclustered gi|300078496|gb|GU001158.1| 5778 g135717 i0 99.156 2.57383966244726 237 2 100 0 1 237 3672 3436 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 610 427 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;