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contig_metadata

35 rows where bioproject = "PRJNA734313" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 35 ✖

bioproject 1

  • PRJNA734313 · 35 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
716724 716724 PRJNA734313_S_NODE_761_length_687_cov_2.364063_g684_i0 PRJNA734313 761 687 2.364063 16.24111281 Alphapapillomavirus 7 337042 Viruses Viruses 1264 0   NTclustered gi|1258167396|gb|MF288663.1| 333761 g684 i0 99.854 100 687 1 100 0 1 687 1554 2240 Human papillomavirus 18 isolate C415154_R1_1138896_N-P, complete genome blastn 68700 1264 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 7
1992712 1992712 PRJNA734313_S_NODE_22442_length_196_cov_22.395973_g22329_i0 PRJNA734313 22442 196 22.395973 43.89610708 Betapolyomavirus macacae 1891767 Viruses Viruses 97.1 7.72e-16   NTclustered gi|15705935|gb|AF416237.1|AF416237 1891767 g22329 i0 92.537 0.341836734693878 67 5 34 0 116 182 156 222 Simian virus 40 clone G14M12 non-archetypal regulatory sequence blastn 67 97.1 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
1992740 1992740 PRJNA734313_S_NODE_8142_length_326_cov_1.827957_g8029_i0 PRJNA734313 8142 326 1.827957 5.95913982 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.009   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g8029 i0 100 0.174846625766871 29 0 9 0 1 29 13 41 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
3268032 3268032 PRJNA734313_S_NODE_4843_length_398_cov_37.039886_g4732_i0 PRJNA734313 4843 398 37.039886 147.41874628 Iltovirus gallidalpha1 3050286 Viruses Viruses 486 8.819999999999998e-133   NTclustered gi|1039754121|gb|KX165321.1| 10386 g4732 i0 89.031 99.8341708542714 392 43 98 0 7 398 26533 26142 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 39734 486 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
5820306 5820306 PRJNA734313_S_NODE_4845_length_398_cov_33.621083_g4734_i0 PRJNA734313 4845 398 33.621083 133.81191034 Iltovirus gallidalpha1 3050286 Viruses Viruses 492 1.8999999999999998e-134   NTclustered gi|1039754121|gb|KX165321.1| 10386 g4734 i0 89.286 4.73618090452261 392 42 98 0 7 398 26533 26142 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 1885 492 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
5820308 5820308 PRJNA734313_S_NODE_65_length_2170_cov_9.735280_g64_i0 PRJNA734313 65 2170 9.73528 211.255576 Moloney murine leukemia virus 11801 Viruses Viruses 1268 0   NR NP_057933.2 11801 g64 i0 97.5 2.67926267281106 646 16 89.3 0 2157 220 690 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5814 1268 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
7095399 7095399 PRJNA734313_S_NODE_6346_length_361_cov_84.719745_g6233_i0 PRJNA734313 6346 361 84.719745 305.83827945 Iltovirus gallidalpha1 3050286 Viruses Viruses 390 6.38e-104   NTclustered gi|1039754121|gb|KX165321.1| 10386 g6233 i0 86.15 100 361 50 100 0 1 361 26142 26502 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 36100 390 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
8370020 8370020 PRJNA734313_S_NODE_6347_length_361_cov_84.401274_g6234_i0 PRJNA734313 6347 361 84.401274 304.68859914 Iltovirus gallidalpha1 3050286 Viruses Viruses 412 1.3599999999999994e-110   NTclustered gi|1039754121|gb|KX165321.1| 10386 g6234 i0 87.258 100 361 46 100 0 1 361 26502 26142 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 36100 412 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
14745622 14745622 PRJNA734313_S_NODE_1132_length_611_cov_26.858156_g1039_i0 PRJNA734313 1132 611 26.858156 164.10333316 Betapolyomavirus macacae 1891767 Viruses Viruses 233 2.01e-56   NTclustered gi|15705935|gb|AF416237.1|AF416237 1891767 g1039 i0 86.385 0.34860883797054 213 29 35 0 15 227 222 10 Simian virus 40 clone G14M12 non-archetypal regulatory sequence blastn 213 233 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
14745651 14745651 PRJNA734313_S_NODE_8992_length_312_cov_45.750943_g8879_i0 PRJNA734313 8992 312 45.750943 142.74294216 Iltovirus gallidalpha1 3050286 Viruses Viruses 377 4.24e-100   NTclustered gi|1039754121|gb|KX165321.1| 10386 g8879 i0 88.462 100 312 36 100 0 1 312 26142 26453 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 31200 377 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
16019212 16019212 PRJNA734313_S_NODE_1133_length_611_cov_26.434397_g1040_i0 PRJNA734313 1133 611 26.434397 161.51416567 Betapolyomavirus macacae 1891767 Viruses Viruses 278 9.18e-70   NTclustered gi|15705938|gb|AF416240.1|AF416240 1891767 g1040 i0 90.141 0.69721767594108 213 21 35 0 385 597 10 222 Simian virus 40 clone G18R15 non-archetypal regulatory sequence blastn 426 278 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
16019256 16019256 PRJNA734313_S_NODE_8993_length_312_cov_39.366038_g8880_i0 PRJNA734313 8993 312 39.366038 122.82203856 Iltovirus gallidalpha1 3050286 Viruses Viruses 339 2e-88   NTclustered gi|1039754121|gb|KX165321.1| 10386 g8880 i0 86.218 100 312 43 100 0 1 312 26453 26142 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 31200 339 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
17294741 17294741 PRJNA734313_S_NODE_15394_length_239_cov_157.145833_g15281_i0 PRJNA734313 15394 239 157.145833 375.57854087 Iltovirus gallidalpha1 3050286 Viruses Viruses 287 5.409999999999999e-73   NTclustered gi|1039754121|gb|KX165321.1| 10386 g15281 i0 88.559 99.8619246861925 236 27 99 0 4 239 26460 26225 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 23867 287 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
17294769 17294769 PRJNA734313_S_NODE_8994_length_312_cov_36.837736_g8881_i0 PRJNA734313 8994 312 36.837736 114.93373632 Iltovirus gallidalpha1 3050286 Viruses Viruses 350 9.24e-92   NTclustered gi|1039754121|gb|KX165321.1| 10386 g8881 i0 86.859 100 312 41 100 0 1 312 26453 26142 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 31200 350 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
19843664 19843664 PRJNA734313_S_NODE_8336_length_322_cov_26.578182_g8223_i0 PRJNA734313 8336 322 26.578182 85.58174604 Iltovirus gallidalpha1 3050286 Viruses Viruses 363 1.23e-95   NTclustered gi|1039754121|gb|KX165321.1| 10386 g8223 i0 87.147 1.99068322981366 319 41 99 0 4 322 26460 26142 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 641 363 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
19843667 19843667 PRJNA734313_S_NODE_8996_length_312_cov_32.618868_g8883_i0 PRJNA734313 8996 312 32.618868 101.77086816 Iltovirus gallidalpha1 3050286 Viruses Viruses 394 4.21e-105   NTclustered gi|1039754121|gb|KX165321.1| 10386 g8883 i0 89.423 100 312 33 100 0 1 312 26142 26453 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 31200 394 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
21119280 21119280 PRJNA734313_S_NODE_15537_length_238_cov_23.921466_g15424_i0 PRJNA734313 15537 238 23.921466 56.93308908 Iltovirus gallidalpha1 3050286 Viruses Viruses 257 4.22e-64   NTclustered gi|1039754121|gb|KX165321.1| 10386 g15424 i0 87.444 95.9663865546218 223 28 94 0 10 232 26311 26533 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 22840 257 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
21119303 21119303 PRJNA734313_S_NODE_8997_length_312_cov_29.547170_g8884_i0 PRJNA734313 8997 312 29.54717 92.1871704 Iltovirus gallidalpha1 3050286 Viruses Viruses 388 1.96e-103   NTclustered gi|1039754121|gb|KX165321.1| 10386 g8884 i0 89.103 100 312 34 100 0 1 312 26453 26142 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 31200 388 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
21598943 21598943 PRJNA734313_S_NODE_21177_length_202_cov_4.129032_g21064_i0 PRJNA734313 21177 202 4.129032 8.34064464 Betapolyomavirus macacae 1891767 Viruses Viruses 63.5 9.98e-10   NR AAK29054.1 1891767 g21064 i0 76.2 0.623762376237624 42 10 62.4 0 135 10 494 535 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 126 63.5 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
23669771 23669771 PRJNA734313_S_NODE_9639_length_302_cov_35.870588_g9526_i0 PRJNA734313 9639 302 35.870588 108.32917576 Iltovirus gallidalpha1 3050286 Viruses Viruses 303 7.03e-78   NTclustered gi|1039754121|gb|KX165321.1| 10386 g9526 i0 84.768 100 302 46 100 0 1 302 26142 26443 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 30200 303 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
27621220 27621220 PRJNA734313_S_NODE_26044_length_181_cov_13.134328_g25931_i0 PRJNA734313 26044 181 13.134328 23.77313368 Spleen focus-forming virus 11819 Viruses Viruses 62.4 1.17e-10   NR CAA48763.1 11819 g25931 i0 82.5 0.662983425414365 40 7 66.3 0 2 121 74 113 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 120 62.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
28031660 28031660 PRJNA734313_S_NODE_26045_length_181_cov_12.843284_g25932_i0 PRJNA734313 26045 181 12.843284 23.24634404 Spleen focus-forming virus 11819 Viruses Viruses 62.4 1.17e-10   NR CAA48763.1 11819 g25932 i0 82.5 0.662983425414365 40 7 66.3 0 2 121 74 113 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 120 62.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
28757669 28757669 PRJNA734313_S_NODE_20587_length_205_cov_9.575949_g20474_i0 PRJNA734313 20587 205 9.575949 19.63069545 Escherichia phage Copypasta 3096133 Viruses Viruses 42.4 0.0033   NR WPH57058.1 3096133 g20474 i0 70.6 0.497560975609756 34 10 49.8 0 1 102 3 36 WPH57058.1 hypothetical protein Copypasta_CDS0011 [Escherichia phage Copypasta] diamond 102 42.4 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Escherichia phage Copypasta
28883957 28883957 PRJNA734313_S_NODE_22688_length_195_cov_3.135135_g22575_i0 PRJNA734313 22688 195 3.135135 6.11351325 Spleen focus-forming virus 11819 Viruses Viruses 53.1 5.95e-7   NR CAA48763.1 11819 g22575 i0 85.7 0.430769230769231 28 4 43.1 0 87 4 19 46 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 84 53.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
29389388 29389388 PRJNA734313_S_NODE_1809_length_539_cov_23.245935_g1704_i0 PRJNA734313 1809 539 23.245935 125.29558965 Spleen focus-forming virus 11819 Viruses Viruses 90.9 4.86e-20   NR CAA48763.1 11819 g1704 i0 83.2 0.528756957328386 95 16 52.9 0 296 12 19 113 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 285 90.9 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
30242071 30242071 PRJNA734313_S_NODE_17092_length_226_cov_3.184358_g16979_i0 PRJNA734313 17092 226 3.184358 7.19664908 Spleen focus-forming virus 11819 Viruses Viruses 54.3 3.08e-7   NR CAA48763.1 11819 g16979 i0 88.7 0.823008849557522 62 7 82.3 0 40 225 19 80 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 186 54.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
31253085 31253085 PRJNA734313_S_NODE_8335_length_322_cov_35.116364_g8222_i0 PRJNA734313 8335 322 35.116364 113.07469208 Human alphaherpesvirus 1 10298 Viruses Viruses 52.4 9.13e-7   NR DAC85507.1 10298 g8222 i0 68.6 1.04347826086957 35 11 32.6 0 112 8 1 35 DAC85507.1 TPA_asm: UL22 uORF 2, partial [Human alphaherpesvirus 1] diamond 336 52.4 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
31284604 31284604 PRJNA734313_S_NODE_20215_length_207_cov_3.287500_g20102_i0 PRJNA734313 20215 207 3.2875 6.805125 Escherichia phage Copypasta 3096133 Viruses Viruses 46.2 9.99e-5   NR WPH57058.1 3096133 g20102 i0 69.7 0.478260869565217 33 10 47.8 0 193 95 18 50 WPH57058.1 hypothetical protein Copypasta_CDS0011 [Escherichia phage Copypasta] diamond 99 46.2 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Escherichia phage Copypasta
31442860 31442860 PRJNA734313_S_NODE_13976_length_251_cov_18.411765_g13863_i0 PRJNA734313 13976 251 18.411765 46.21353015 Escherichia phage Copypasta 3096133 Viruses Viruses 47.8 4.21e-5   NR WPH57058.1 3096133 g13863 i0 62 0.597609561752988 50 19 59.8 0 244 95 1 50 WPH57058.1 hypothetical protein Copypasta_CDS0011 [Escherichia phage Copypasta] diamond 150 47.8 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Escherichia phage Copypasta
31759112 31759112 PRJNA734313_S_NODE_11217_length_280_cov_18.579399_g11104_i0 PRJNA734313 11217 280 18.579399 52.0223172 Escherichia phage Copypasta 3096133 Viruses Viruses 44.3 0.00133   NR WPH57058.1 3096133 g11104 i0 60 0.535714285714286 50 20 53.6 0 8 157 1 50 WPH57058.1 hypothetical protein Copypasta_CDS0011 [Escherichia phage Copypasta] diamond 150 44.3 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Escherichia phage Copypasta
31822258 31822258 PRJNA734313_S_NODE_14437_length_247_cov_8.305000_g14324_i0 PRJNA734313 14437 247 8.305 20.51335 Escherichia phage Copypasta 3096133 Viruses Viruses 53.1 3.06e-7   NR WPH57058.1 3096133 g14324 i0 62.5 0.582995951417004 48 18 58.3 0 247 104 3 50 WPH57058.1 hypothetical protein Copypasta_CDS0011 [Escherichia phage Copypasta] diamond 144 53.1 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Escherichia phage Copypasta
32012273 32012273 PRJNA734313_S_NODE_10018_length_296_cov_7.971888_g9905_i0 PRJNA734313 10018 296 7.971888 23.59678848 Spleen focus-forming virus 11819 Viruses Viruses 89.4 1.29e-20   NR CAA48763.1 11819 g9905 i0 82.1 0.962837837837838 95 17 96.3 0 1 285 19 113 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 285 89.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
32329003 32329003 PRJNA734313_S_NODE_23359_length_192_cov_62.158621_g23246_i0 PRJNA734313 23359 192 62.158621 119.34455232 Betapolyomavirus macacae 1891767 Viruses Viruses 64.3 4.72e-10   NR AAK29054.1 1891767 g23246 i0 76.7 0.671875 43 10 67.2 0 40 168 495 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 129 64.3 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
32391964 32391964 PRJNA734313_S_NODE_25279_length_184_cov_57.343066_g25166_i0 PRJNA734313 25279 184 57.343066 105.51124144 Betapolyomavirus macacae 1891767 Viruses Viruses 61.6 3.71e-9   NR AAK29054.1 1891767 g25166 i0 69.8 0.701086956521739 43 13 70.1 0 40 168 495 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 129 61.6 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
32739310 32739310 PRJNA734313_S_NODE_13420_length_256_cov_36.138756_g13307_i0 PRJNA734313 13420 256 36.138756 92.51521536 Betapolyomavirus macacae 1891767 Viruses Viruses 63.9 1.49e-9   NR AAK29054.1 1891767 g13307 i0 72.7 0.515625 44 12 51.6 0 56 187 494 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 132 63.9 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;