RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA734313" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA734313 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29704549 29704549 PRJNA734313_S_NODE_22830_length_195_cov_1.033784_g22717_i0 PRJNA734313 22830 195 1.033784 2.0158788 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 42 0.0374   NR CAF0712133.1 104777 g22717 i0 40.9 0.676923076923077 44 23 66.2 2 138 10 220 261 CAF0712133.1 unnamed protein product [Brachionus calyciflorus] diamond 132 42 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
32707612 32707612 PRJNA734313_S_NODE_34900_length_160_cov_0.902655_g34787_i0 PRJNA734313 34900 160 0.902655 1.444248 Didymodactylos carnosus 1234261 Rotifera other_Eukaryota 90.5 3.3700000000000003e-22   NR CAF1621987.1 1234261 g34787 i0 90.4 2.925 52 5 97.5 0 3 158 25 76 CAF1621987.1 unnamed protein product, partial [Didymodactylos carnosus] diamond 468 90.5 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Didymodactylos Didymodactylos carnosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;