RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA734313" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA734313 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9645202 9645202 PRJNA734313_S_NODE_6228_length_364_cov_3.861199_g6115_i0 PRJNA734313 6228 364 3.861199 14.05476436 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.01   NTclustered gi|2912993551|dbj|AP039598.1| 145626 g6115 i0 96.97 0.0906593406593407 33 0 9 1 247 279 61367764 61367795 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 17, sequence blastn 33 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
27210250 27210250 PRJNA734313_S_NODE_9802_length_300_cov_1.584980_g9689_i0 PRJNA734313 9802 300 1.58498 4.75494 Patella caerulea 87958 Mollusca Mollusca 56.2 2.12e-7   NR KAK6168675.1 87958 g9689 i0 39.6 1.74 91 51 90 2 278 9 34 121 KAK6168675.1 hypothetical protein SNE40_019866 [Patella caerulea] diamond 522 56.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella caerulea
30726084 30726084 PRJNA734313_S_NODE_35174_length_159_cov_2.276786_g35061_i0 PRJNA734313 35174 159 2.276786 3.62008974 root 1 Root_unresolved Root_unresolved 54.7 7.07e-7   NR KAJ8321611.1 220873 g35061 i0 48.1 3.69811320754717 52 27 98.1 0 2 157 219 270 KAJ8321611.1 hypothetical protein KUTeg_000082 [Tegillarca granosa] diamond 588 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Arcoida Arcidae Tegillarca Tegillarca granosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;