RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA734313" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA734313 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7095384 7095384 PRJNA734313_S_NODE_20306_length_207_cov_1.437500_g20193_i0 PRJNA734313 20306 207 1.4375 2.975625 Cavenderia fasciculata 261658 Evosea other_Eukaryota 106 1.37e-18   NTclustered gi|85062631|gb|DQ340389.1| 261658 g20193 i0 92 32.4009661835749 75 6 36 0 2 76 15202 15276 Dictyostelium fasciculatum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence blastn 6707 106 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
8370007 8370007 PRJNA734313_S_NODE_29707_length_169_cov_1.672131_g29594_i0 PRJNA734313 29707 169 1.672131 2.82590139 Entamoeba histolytica 5759 Evosea other_Eukaryota 80.5 6.47e-11   NTclustered gi|415339|emb|X65163.1| 5759 g29594 i0 82.955 0.994082840236686 88 15 52 0 82 169 6160 6073 E.histolytica rRNA blastn 168 80.5 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
29357718 29357718 PRJNA734313_S_NODE_17349_length_225_cov_1.146067_g17236_i0 PRJNA734313 17349 225 1.146067 2.57865075 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 45.4 0.00327   NR KAH3763404.1 1580589 g17236 i0 41.8 0.733333333333333 55 19 73.3 1 41 205 650 691 KAH3763404.1 protein mono-ADP-ribosyltransferase PARP6 [Pelomyxa schiedti] diamond 165 45.4 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;