RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA734313", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

  • Viridiplantae · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA734313 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27716193 27716193 PRJNA734313_S_NODE_19924_length_209_cov_1.555556_g19811_i0 PRJNA734313 19924 209 1.555556 3.25111204 Cymbomonas tetramitiformis 36881 Plants Plants 43.5 0.0128   NR KAK3280606.1 36881 g19811 i0 44.2 0.746411483253589 52 29 74.6 0 45 200 391 442 KAK3280606.1 hypothetical protein CYMTET_11558 [Cymbomonas tetramitiformis] diamond 156 43.5 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
32644383 32644383 PRJNA734313_S_NODE_5840_length_373_cov_3.113497_g5727_i0 PRJNA734313 5840 373 3.113497 11.61334381 Chlorella vulgaris 3077 Plants Plants 46.6 0.00683   NR KAI3424829.1 3077 g5727 i0 40.8 2.15549597855228 49 28 39.4 1 199 345 340 387 KAI3424829.1 hypothetical protein D9Q98_008215 [Chlorella vulgaris] diamond 804 46.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;