RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA734313" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 7 ✖

bioproject 1

  • PRJNA734313 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5820308 5820308 PRJNA734313_S_NODE_65_length_2170_cov_9.735280_g64_i0 PRJNA734313 65 2170 9.73528 211.255576 Moloney murine leukemia virus 11801 Viruses Viruses 1268 0   NR NP_057933.2 11801 g64 i0 97.5 2.67926267281106 646 16 89.3 0 2157 220 690 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5814 1268 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
27621220 27621220 PRJNA734313_S_NODE_26044_length_181_cov_13.134328_g25931_i0 PRJNA734313 26044 181 13.134328 23.77313368 Spleen focus-forming virus 11819 Viruses Viruses 62.4 1.17e-10   NR CAA48763.1 11819 g25931 i0 82.5 0.662983425414365 40 7 66.3 0 2 121 74 113 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 120 62.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
28031660 28031660 PRJNA734313_S_NODE_26045_length_181_cov_12.843284_g25932_i0 PRJNA734313 26045 181 12.843284 23.24634404 Spleen focus-forming virus 11819 Viruses Viruses 62.4 1.17e-10   NR CAA48763.1 11819 g25932 i0 82.5 0.662983425414365 40 7 66.3 0 2 121 74 113 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 120 62.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
28883957 28883957 PRJNA734313_S_NODE_22688_length_195_cov_3.135135_g22575_i0 PRJNA734313 22688 195 3.135135 6.11351325 Spleen focus-forming virus 11819 Viruses Viruses 53.1 5.95e-7   NR CAA48763.1 11819 g22575 i0 85.7 0.430769230769231 28 4 43.1 0 87 4 19 46 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 84 53.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
29389388 29389388 PRJNA734313_S_NODE_1809_length_539_cov_23.245935_g1704_i0 PRJNA734313 1809 539 23.245935 125.29558965 Spleen focus-forming virus 11819 Viruses Viruses 90.9 4.86e-20   NR CAA48763.1 11819 g1704 i0 83.2 0.528756957328386 95 16 52.9 0 296 12 19 113 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 285 90.9 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
30242071 30242071 PRJNA734313_S_NODE_17092_length_226_cov_3.184358_g16979_i0 PRJNA734313 17092 226 3.184358 7.19664908 Spleen focus-forming virus 11819 Viruses Viruses 54.3 3.08e-7   NR CAA48763.1 11819 g16979 i0 88.7 0.823008849557522 62 7 82.3 0 40 225 19 80 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 186 54.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus
32012273 32012273 PRJNA734313_S_NODE_10018_length_296_cov_7.971888_g9905_i0 PRJNA734313 10018 296 7.971888 23.59678848 Spleen focus-forming virus 11819 Viruses Viruses 89.4 1.29e-20   NR CAA48763.1 11819 g9905 i0 82.1 0.962837837837838 95 17 96.3 0 1 285 19 113 CAA48763.1 envelope glycoprotein, partial [Spleen focus-forming virus] diamond 285 89.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Spleen focus-forming virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;