RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA734313", tax_clade = "Opisthokonta" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA734313 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8370011 8370011 PRJNA734313_S_NODE_35707_length_159_cov_0.910714_g35594_i0 PRJNA734313 35707 159 0.910714 1.44803526 Malassezia globosa 76773 Fungi Fungi 289 9.22e-74   NTclustered gi|164661746|ref|XM_001731944.1| 425265 g35594 i0 99.371 2.18867924528302 159 1 100 0 1 159 340 498 Malassezia globosa CBS 7966 uncharacterized protein (MGL_1264), partial mRNA blastn 348 289 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia globosa
13470456 13470456 PRJNA734313_S_NODE_26531_length_180_cov_1.150376_g26418_i0 PRJNA734313 26531 180 1.150376 2.0706768 Malassezia restricta 76775 Fungi Fungi 333 4.87e-87   NTclustered gi|1546631982|ref|XM_027627651.1| 76775 g26418 i0 100 1 180 0 100 0 1 180 1520 1341 Malassezia restricta vacuolar carboxypeptidase (MRET_1024), partial mRNA blastn 180 333 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
16499768 16499768 PRJNA734313_S_NODE_15693_length_237_cov_2.389474_g15580_i0 PRJNA734313 15693 237 2.389474 5.66305338 Malassezia 55193 Fungi Fungi 370 5.17e-98   NTclustered gi|374713623|gb|JN687941.1| 76775 g15580 i0 98.113 89.4092827004219 212 4 89 0 26 237 25 236 Malassezia restricta strain ITC4-2 26S ribosomal RNA gene, partial sequence blastn 21190 370 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
21119288 21119288 PRJNA734313_S_NODE_22777_length_195_cov_1.378378_g22664_i0 PRJNA734313 22777 195 1.378378 2.6878371 Malassezia restricta 76775 Fungi Fungi 182 2.06e-41   NTclustered gi|1546632628|ref|XM_027627974.1| 76775 g22664 i0 99.02 1.35897435897436 102 0 52 1 1 101 935 834 Malassezia restricta 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) (MRET_1347), partial mRNA blastn 265 182 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
22394226 22394226 PRJNA734313_S_NODE_13298_length_258_cov_1.052133_g13185_i0 PRJNA734313 13298 258 1.052133 2.71450314 Ustilaginaceae 5268 Fungi Fungi 61.6 1.02e-8   NR CDS02184.1 49012 g13185 i0 41.5 5.63953488372093 65 38 75.6 0 33 227 1829 1893 CDS02184.1 hypothetical protein [Sporisorium scitamineum] diamond 1455 62 0.993548387096774 Eukaryota Opisthokonta Fungi Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Sporisorium Sporisorium scitamineum
22394240 22394240 PRJNA734313_S_NODE_29658_length_169_cov_2.090164_g29545_i0 PRJNA734313 29658 169 2.090164 3.53237716 Malassezia restricta 76775 Fungi Fungi 313 5.859999999999999e-81   NTclustered gi|1546630895|ref|XM_027627108.1| 76775 g29545 i0 100 12.0236686390533 169 0 100 0 1 169 302 470 Malassezia restricta large subunit ribosomal protein L11e (MRET_0481), partial mRNA blastn 2032 313 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;