RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA733995", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA733995 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13950664 13950664 PRJNA733995_P_NODE_8791_length_290_cov_1.092166_g8744_i0 PRJNA733995 8791 290 1.092166 3.1672814 Polyangiaceae 49 Bacteria Bacteria 183 9.13e-42   NTclustered gi|161158851|emb|AM746676.1| 448385 g8744 i0 79.021 25.2103448275862 286 46 98 13 5 283 4116002 4116280 Sorangium cellulosum 'So ce 56' complete genome blastn 7311 183 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
29768002 29768002 PRJNA733995_P_NODE_4851_length_392_cov_1.222571_g4804_i0 PRJNA733995 4851 392 1.222571 4.79247832 Kofleriaceae bacterium 2212474 Bacteria Bacteria 47.8 0.0029   NR HEU5059404.1 2212474 g4804 i0 37.9 1.01020408163265 66 40 50.5 1 187 384 105 169 HEU5059404.1 HAMP domain-containing sensor histidine kinase [Kofleriaceae bacterium] diamond 396 47.8 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32360565 32360565 PRJNA733995_P_NODE_5319_length_374_cov_1.279070_g5272_i0 PRJNA733995 5319 374 1.27907 4.7837218 Polyangiales bacterium 3034171 Bacteria Bacteria 80.9 1.73e-15   NR HEX5657444.1 3034171 g5272 i0 45.1 1.94919786096257 91 49 72.2 1 273 4 68 158 HEX5657444.1 glycosyltransferase family 8 protein [Polyangiales bacterium] diamond 729 80.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
32739306 32739306 PRJNA733995_P_NODE_9200_length_284_cov_1.772512_g9153_i0 PRJNA733995 9200 284 1.772512 5.03393408 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.5 0.0301   NR MCY4486325.1 2026735 g9153 i0 34.3 0.73943661971831 70 43 70.8 1 13 213 114 183 MCY4486325.1 esterase-like activity of phytase family protein [Deltaproteobacteria bacterium] diamond 210 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;