RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA733995" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA733995 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5820189 5820189 PRJNA733995_P_NODE_11405_length_257_cov_1.614130_g11358_i0 PRJNA733995 11405 257 1.61413 4.1483141 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.006   NTclustered gi|2874253709|emb|OY969474.1| 171953 g11358 i0 88.889 0.175097276264591 45 4 18 1 195 239 3783568 3783611 MAG: uncultured Acidobacteriota bacterium isolate MFD05747.bin.1.131 genome assembly, chromosome: 1 blastn 45 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
29546911 29546911 PRJNA733995_P_NODE_5610_length_363_cov_2.124138_g5563_i0 PRJNA733995 5610 363 2.124138 7.71062094 Acidobacteriota bacterium 1978231 Bacteria Bacteria 67.4 1.86e-10   NR MFC2166799.1 1978231 g5563 i0 32.5 0.991735537190083 120 75 99.2 3 3 362 71 184 MFC2166799.1 hypothetical protein [Acidobacteriota bacterium] diamond 360 67.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;