RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA733995" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA733995 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2472094 2472094 PRJNA733995_P_NODE_5562_length_365_cov_2.373288_g5515_i0 PRJNA733995 5562 365 2.373288 8.6625012 Deinococcus 1298 Bacteria Bacteria 675 0   NTclustered gi|1435316362|gb|CP031158.1| 980427 g5515 i0 100 198.802739726027 365 0 100 0 1 365 1792073 1792437 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 72563 675 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
13470374 13470374 PRJNA733995_P_NODE_12831_length_246_cov_1.647399_g12784_i0 PRJNA733995 12831 246 1.647399 4.05260154 Deinococcus 1298 Bacteria Bacteria 125 9.26e-33   NR MDQ3398368.1 1913990 g12784 i0 69.1 1.97560975609756 81 25 98.8 0 2 244 212 292 MDQ3398368.1 hypothetical protein [Deinococcota bacterium] diamond 486 125 1 Bacteria   Thermotogati Deinococcota         Deinococcota bacterium
16499738 16499738 PRJNA733995_P_NODE_10253_length_270_cov_2.736041_g10206_i0 PRJNA733995 10253 270 2.736041 7.3873107 Deinococcus 1298 Bacteria Bacteria 499 7.349999999999998e-137   NTclustered gi|1435316362|gb|CP031158.1| 980427 g10206 i0 100 184.703703703704 270 0 100 0 1 270 1793525 1793256 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 49870 499 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
30747521 30747521 PRJNA733995_P_NODE_12634_length_247_cov_1.459770_g12587_i0 PRJNA733995 12634 247 1.45977 3.6056319 Deinococcus budaensis 1665626 Bacteria Bacteria 59.3 5.5e-8   NR WP_184027715.1 1665626 g12587 i0 87.1 0.753036437246964 31 4 37.7 0 246 154 376 406 WP_184027715.1 bifunctional DNA primase/polymerase [Deinococcus budaensis] diamond 186 59.3 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus budaensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;