RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA733995", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA733995 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12195946 12195946 PRJNA733995_P_NODE_1330_length_780_cov_4.322489_g1286_i0 PRJNA733995 1330 780 4.322489 33.7154142 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 289 5.48e-73   NTclustered gi|675211322|ref|XM_008916298.1| 761204 g1286 i0 86.873 33.4961538461538 259 32 33 2 466 723 270 13 Phytophthora parasitica INRA-310 dynein light chain LC6, flagellar outer arm partial mRNA blastn 26127 289 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
13470401 13470401 PRJNA733995_P_NODE_3711_length_455_cov_3.096859_g3664_i0 PRJNA733995 3711 455 3.096859 14.09070845 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 209 2.47e-49   NTclustered gi|2795039278|ref|XM_067938479.1| 4785 g3664 i0 80.427 11.6813186813187 281 49 61 6 4 281 164 441 Phytophthora cinnamomi iron sulfur cluster assembly protein 1 (IUM83_13781), partial mRNA blastn 5315 209 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;