RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA728642" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA728642 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1194961 1194961 PRJNA728642_P_NODE_1_length_7420_cov_5.861440_g0_i0 PRJNA728642 1 7420 5.86144 434.918848 Orthoavulavirus 2560194 Viruses Viruses 13692 0   NTclustered gi|1852396255|gb|MN862503.1| 159079 g0 i0 99.973 99.9537735849057 7420 2 100 0 1 7420 1723 9142 Pigeon paramyxovirus 1 strain Pigeon/Shandong/LCE4/2016, complete genome blastn 741657 13692 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
6299140 6299140 PRJNA728642_P_NODE_5_length_6065_cov_6.578939_g4_i0 PRJNA728642 5 6065 6.578939 399.01265035 Orthoavulavirus 2560194 Viruses Viruses 11201 0   NTclustered gi|1852396262|gb|MN862504.1| 159079 g4 i0 100 99.8966199505359 6065 0 100 0 1 6065 15177 9113 Pigeon paramyxovirus 1 strain Pigeon/Shandong/LC/2017, complete genome blastn 605873 11201 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
7572915 7572915 PRJNA728642_P_NODE_386_length_1647_cov_6.378018_g246_i0 PRJNA728642 386 1647 6.378018 105.04595646 Orthoavulavirus 2560194 Viruses Viruses 3042 0   NTclustered gi|1852396255|gb|MN862503.1| 159079 g246 i0 100 98.8348512446873 1647 0 100 0 1 1647 25 1671 Pigeon paramyxovirus 1 strain Pigeon/Shandong/LCE4/2016, complete genome blastn 162781 3042 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
8847929 8847929 PRJNA728642_P_NODE_13727_length_272_cov_1.010050_g13456_i0 PRJNA728642 13727 272 1.01005 2.7473359999999998 Orthoavulavirus 2560194 Viruses Viruses 501 2.06e-137   NTclustered gi|1852396276|gb|MN862506.1| 159079 g13456 i0 100 99.9889705882353 271 0 99 0 1 271 11232 11502 Pigeon paramyxovirus 1 strain Pigeon/Shandong/190610-2/2019, complete genome blastn 27197 503 0.996023856858847 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
10916913 10916913 PRJNA728642_P_NODE_18649_length_243_cov_1.211765_g18378_i0 PRJNA728642 18649 243 1.211765 2.94458895 Zebrafish influenza B-like virus RQ01 Viruses Viruses 444 3.09e-120   NTclustered gi|1798036485|gb|MN948960.1| RQ01 g18378 i0 99.588 100 243 1 100 0 1 243 2209 1967 Influenza A virus (A/Pennsylvania/1026/2019(H3N2)) segment 3 polymerase PA (PA) and PA-X protein (PA-X) genes, complete cds blastn 24300 444 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Zebrafish influenza B-like virus
12192100 12192100 PRJNA728642_P_NODE_13230_length_277_cov_0.975490_g12959_i0 PRJNA728642 13230 277 0.97549 2.7021073 Orthoavulavirus javaense 3051375 Viruses Viruses 507 4.53e-139   NTclustered gi|2161956354|gb|MW271787.1| 2560319 g12959 i0 99.639 100 277 1 100 0 1 277 7405 7681 Avian paramyxovirus 1 isolate JS/09/16/Pi nucleoprotein (NP), phosphorprotein (P), matrix protein (M), fusion protein (F), hemagglutinin-neuraminidase (HN), and large polymerase protein (L) genes, complete cds blastn 27700 507 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;