RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA728642" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA728642 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10917086 10917086 PRJNA728642_P_NODE_9109_length_337_cov_1.166667_g8838_i0 PRJNA728642 9109 337 1.166667 3.93166779 Fuligo septica 159720 Evosea other_Eukaryota 75 6.79e-9   NTclustered gi|37515398|emb|AJ584697.1| 159720 g8838 i0 79.279 3.29376854599407 111 20 33 2 1 111 9694 9587 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 1110 75 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
32360496 32360496 PRJNA728642_P_NODE_19459_length_241_cov_1.297619_g19188_i0 PRJNA728642 19459 241 1.297619 3.12726179 Polysphondylium violaceum 133409 Evosea other_Eukaryota 54.3 3.06e-6   NR KAF2071594.1 133409 g19188 i0 39 0.734439834024896 59 36 73.4 0 21 197 1902 1960 KAF2071594.1 hypothetical protein CYY_007084 [Polysphondylium violaceum] diamond 177 54.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;