RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA728642", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA728642 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28094608 28094608 PRJNA728642_P_NODE_17965_length_245_cov_0.895349_g17694_i0 PRJNA728642 17965 245 0.895349 2.19360505 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 85.9 5.56e-20   NR MCC6711907.1 2080303 g17694 i0 93 1.0530612244898 43 3 52.7 0 244 116 33 75 MCC6711907.1 chorismate synthase [Candidatus Dadabacteria bacterium] diamond 258 85.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
32675879 32675879 PRJNA728642_P_NODE_19940_length_233_cov_2.056250_g19669_i0 PRJNA728642 19940 233 2.05625 4.7910625 Desulfatibacillum aliphaticivorans 218208 Bacteria Bacteria 41.2 0.0343   NR WP_081436040.1 218208 g19669 i0 36.1 0.927038626609442 72 46 92.7 0 17 232 12 83 WP_081436040.1 tetratricopeptide repeat protein [Desulfatibacillum aliphaticivorans] diamond 216 41.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfatibacillaceae Desulfatibacillum Desulfatibacillum aliphaticivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;