RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA728642", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA728642 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10123473 10123473 PRJNA728642_P_NODE_17028_length_248_cov_0.880000_g16757_i0 PRJNA728642 17028 248 0.88 2.1824 Mycoplasma 2093 Bacteria Bacteria 448 2.4499999999999996e-121   NTclustered gi|2294785939|gb|CP103424.1| 51364 g16757 i0 99.194 99.8790322580645 248 2 100 0 1 248 111801 111554 Mycoplasma cottewii strain VIS chromosome, complete genome blastn 24770 448 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
12674501 12674501 PRJNA728642_P_NODE_15870_length_251_cov_0.865169_g15599_i0 PRJNA728642 15870 251 0.865169 2.17157419 Mollicutes 31969 Bacteria Bacteria 464 2.47e-126   NTclustered gi|2668342370|gb|CP143577.1| 2094 g15599 i0 100 106.996015936255 251 0 100 0 1 251 373954 374204 Mycoplasmopsis arginini strain NCTC 10129 chromosome, complete genome blastn 26856 464 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
21597257 21597257 PRJNA728642_P_NODE_5037_length_460_cov_3.328165_g4766_i0 PRJNA728642 5037 460 3.328165 15.309559 Bacteria 2 Bacteria Bacteria 839 0   NTclustered gi|365822471|gb|JN935874.1| 51364 g4766 i0 99.565 167.319565217391 460 2 100 0 1 460 1355 896 Mycoplasma cottewii strain VIS 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 76967 845 0.992899408284024 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;