RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA728642", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 5 ✖

tax_kingdom 1

  • Bacillati · 5 ✖

bioproject 1

  • PRJNA728642 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17290838 17290838 PRJNA728642_P_NODE_16494_length_249_cov_0.875000_g16223_i0 PRJNA728642 16494 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 134 1.99e-34   NR NWF79006.1 2026724 g16223 i0 85.4 4.93975903614458 82 12 98.8 0 247 2 157 238 NWF79006.1 DNA mismatch repair endonuclease MutL [Chloroflexota bacterium] diamond 1230 135 0.992592592592593 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27494760 27494760 PRJNA728642_P_NODE_11003_length_305_cov_1.465517_g10732_i0 PRJNA728642 11003 305 1.465517 4.46982685 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 45.8 4.85e-4   NR MEE8598495.1 2026733 g10732 i0 59.5 0.363934426229508 37 15 36.4 0 2 112 9 45 MEE8598495.1 tetratricopeptide repeat protein [Dehalococcoidales bacterium] diamond 111 45.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium
28000104 28000104 PRJNA728642_P_NODE_6185_length_413_cov_0.917647_g5914_i0 PRJNA728642 6185 413 0.917647 3.78988211 Chloroflexota bacterium 2026724 Bacteria Bacteria 98.6 2.16e-22   NR MEW6505914.1 2026724 g5914 i0 58.3 0.697336561743341 96 33 66.8 4 137 412 2 94 MEW6505914.1 hypothetical protein [Chloroflexota bacterium] diamond 288 98.6 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31516550 31516550 PRJNA728642_P_NODE_13996_length_269_cov_1.198980_g13725_i0 PRJNA728642 13996 269 1.19898 3.2252562 Bacillati 1783272 Bacteria Bacteria 147 1.99e-42   NR MEW6505914.1 2026724 g13725 i0 77.8 2.00743494423792 90 18 98.1 1 2 265 109 198 MEW6505914.1 hypothetical protein [Chloroflexota bacterium] diamond 540 148 0.993243243243243 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31674325 31674325 PRJNA728642_P_NODE_11197_length_302_cov_2.650655_g10926_i0 PRJNA728642 11197 302 2.650655 8.0049781 Bacillati 1783272 Bacteria Bacteria 178 4.3e-51   NR MEW6505708.1 2026724 g10926 i0 85 1.98675496688742 100 15 99.3 0 302 3 189 288 MEW6505708.1 hypothetical protein [Chloroflexota bacterium] diamond 600 178 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;