RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA728642" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA728642 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1988896 1988896 PRJNA728642_P_NODE_19242_length_242_cov_0.911243_g18971_i0 PRJNA728642 19242 242 0.911243 2.20520806 Chlamydomonas sp. CCMP233 327069 Plants Plants 58.4 4.69e-4   NTclustered gi|66864265|gb|DQ015720.1| 327069 g18971 i0 100 12.6404958677686 31 0 13 0 131 161 1512 1542 Chlamydomonas sp. CCMP233 strain CCMP 233 26S ribosomal RNA gene, partial sequence blastn 3059 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. CCMP233
5816483 5816483 PRJNA728642_P_NODE_17205_length_247_cov_1.005747_g16934_i0 PRJNA728642 17205 247 1.005747 2.48419509 Desmochloris halophila 138176 Plants Plants 433 6.82e-117   NTclustered gi|371782123|emb|HE610155.1| 138176 g16934 i0 98.374 109.109311740891 246 4 99 0 1 246 3612 3857 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 26950 433 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
20321361 20321361 PRJNA728642_P_NODE_13276_length_276_cov_1.492611_g13005_i0 PRJNA728642 13276 276 1.492611 4.11960636 Desmochloris 138596 Plants Plants 501 2.1e-137   NTclustered gi|57864438|dbj|AB049416.2| 138176 g13005 i0 99.635 99.7826086956522 274 1 99 0 3 276 922 649 Desmochloris halophila gene for 18S rRNA blastn 27540 505 0.992079207920792 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
21115383 21115383 PRJNA728642_P_NODE_15517_length_253_cov_1.711111_g15246_i0 PRJNA728642 15517 253 1.711111 4.32911083 Desmochloris halophila 138176 Plants Plants 412 9.14e-111   NTclustered gi|371782086|emb|HE610118.1| 138176 g15246 i0 96.063 70.1857707509881 254 9 100 1 1 253 3964 3711 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 17757 412 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;