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contig_metadata

4 rows where bioproject = "PRJNA728642", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA728642 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10916943 10916943 PRJNA728642_P_NODE_19969_length_231_cov_3.202532_g19698_i0 PRJNA728642 19969 231 3.202532 7.39784892 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 388 1.39e-103   NTclustered gi|325194423|emb|FR825253.1| 890382 g19698 i0 97.368 99.948051948052 228 6 99 0 4 231 961 734 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 23088 388 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
13466447 13466447 PRJNA728642_P_NODE_11551_length_297_cov_1.808036_g11280_i0 PRJNA728642 11551 297 1.808036 5.36986692 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 532 8.08e-147   NTclustered gi|695467811|ref|XM_009541420.1| 67593 g11280 i0 98.99 83.3265993265993 297 3 100 0 1 297 309 13 Phytophthora sojae hypothetical protein mRNA blastn 24748 532 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
21115475 21115475 PRJNA728642_P_NODE_20117_length_226_cov_2.013072_g19846_i0 PRJNA728642 20117 226 2.013072 4.54954272 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 407 3.73e-109   NTclustered gi|1235732004|gb|MF693907.1| 4779 g19846 i0 99.115 99.5663716814159 226 2 100 0 1 226 1360 1135 Bremia lactucae isolate RC16DM6 large subunit ribosomal RNA gene, partial sequence blastn 22502 407 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
26957221 26957221 PRJNA728642_P_NODE_14162_length_267_cov_1.587629_g13891_i0 PRJNA728642 14162 267 1.587629 4.23896943 Phytophthora fragariaefolia 1490495 SAR_Eukaryotes SAR_Eukaryotes 69.7 1.33e-11   NR GMF44391.1 1490495 g13891 i0 51.1 1.03370786516854 92 34 98.9 3 266 3 93 177 GMF44391.1 unnamed protein product [Phytophthora fragariaefolia] diamond 276 69.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariaefolia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;