RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA728642", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA728642 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14741745 14741745 PRJNA728642_P_NODE_10972_length_306_cov_0.991416_g10701_i0 PRJNA728642 10972 306 0.991416 3.03373296 Verrucomicrobium sp. GAS474 1882831 Bacteria Bacteria 372 1.93e-98   NTclustered gi|1085974270|emb|LT629781.1| 1882831 g10701 i0 89.262 284.415032679739 298 30 97 1 9 306 3537422 3537717 Verrucomicrobiaceae bacterium GAS474 genome assembly, chromosome: I blastn 87031 372 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. GAS474
32328912 32328912 PRJNA728642_P_NODE_17619_length_246_cov_0.890173_g17348_i0 PRJNA728642 17619 246 0.890173 2.18982558 Opitutaceae bacterium 2006848 Bacteria Bacteria 125 1.45e-33   NR MCU0791479.1 2006848 g17348 i0 76.8 1 82 19 100 0 1 246 99 180 MCU0791479.1 iron-sulfur cluster repair di-iron protein [Opitutaceae bacterium] diamond 246 125 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;