RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA727760" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA727760 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1194778 1194778 PRJNA727760_S_NODE_21_length_1897_cov_6.392544_g20_i0 PRJNA727760 21 1897 6.392544 121.26655968 root 1 Root_unresolved Root_unresolved 3439 0   NTclustered gi|61006|emb|X56131.1| 12730 g20 i0 99.576 46.6009488666315 1886 8 99 0 1 1886 1886 1 Sendai virus HN gene for Haemagglutinin/Neuraminidase blastn 88402 3472 0.990495391705069 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
4541066 4541066 PRJNA727760_S_NODE_24_length_1880_cov_8.637521_g23_i0 PRJNA727760 24 1880 8.637521 162.3853948 Respirovirus muris 3052731 Viruses Viruses 3356 0   NTclustered gi|546225817|dbj|AB855654.1| 3052731 g23 i0 99.945 73.0893617021277 1820 1 97 0 61 1880 4813 6632 Respirovirus muris genomic RNA, complete genome, strain: Cantell, clone: cCdi blastn 137408 3356 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus muris
21596993 21596993 PRJNA727760_S_NODE_117_length_1222_cov_22.433420_g107_i0 PRJNA727760 117 1222 22.43342 274.1363924 root 1 Root_unresolved Root_unresolved 2146 0   NTclustered gi|62017|emb|X53056.1| 12730 g107 i0 99.914 63.4959083469722 1165 1 95 0 50 1214 1165 1 Sendai virus mRNA for matrix protein blastn 77592 2152 0.997211895910781 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
22872313 22872313 PRJNA727760_S_NODE_18_length_1926_cov_11.681597_g17_i0 PRJNA727760 18 1926 11.681597 224.98755822 Respirovirus 186938 Viruses Viruses 3450 0   NTclustered gi|62011|emb|X17008.1| 12730 g17 i0 99.629 62.48753894081 1889 7 98 0 28 1916 1889 1 Sendai virus polymerase (P) gene (strain fushimi) blastn 120351 3483 0.99052540913006 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;