RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA727760" and tax_phylum = "Arthropoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA727760 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1988716 1988716 PRJNA727760_S_NODE_3902_length_233_cov_3.900000_g3874_i0 PRJNA727760 3902 233 3.9 9.087 Helicoverpa assulta 52344 Arthropoda Arthropoda 56.5 0.002   NTclustered gi|2636206747|emb|OY979773.1| 52344 g3874 i0 100 0.128755364806867 30 0 13 0 180 209 17358019 17357990 Helicoverpa assulta genome assembly, chromosome: Z blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Noctuidae Helicoverpa Helicoverpa assulta
29052270 29052270 PRJNA727760_S_NODE_1428_length_385_cov_6.169872_g1400_i0 PRJNA727760 1428 385 6.169872 23.7540072 root 1 Root_unresolved Root_unresolved 53.1 4.16e-5   NR GBN61280.1 182803 g1400 i0 50.9 3.8025974025974 53 26 41.3 0 269 111 1136 1188 GBN61280.1 putative RNA-directed DNA polymerase from transposon X-element [Araneus ventricosus] diamond 1464 53.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Araneidae Araneus Araneus ventricosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;