RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA727760" and tax_clade = "Human papillomavirus types"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human papillomavirus types · 3 ✖

bioproject 1

  • PRJNA727760 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5023066 5023066 PRJNA727760_S_NODE_2724_length_277_cov_1.642157_g2696_i0 PRJNA727760 2724 277 1.642157 4.54877489 Alphapapillomavirus 333750 Viruses Viruses 388 1.7099999999999998e-103   NTclustered gi|1162227033|gb|KY501965.1| 10566 g2696 i0 100 76.057761732852 210 0 76 0 49 258 1261 1052 Human papillomavirus isolate HPV18 P1 replication protein E1 (E1) gene, partial cds blastn 21068 390 0.994871794871795 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
19046593 19046593 PRJNA727760_S_NODE_1035_length_464_cov_1.982097_g1007_i0 PRJNA727760 1035 464 1.982097 9.19693008 Alphapapillomavirus 333750 Viruses Viruses 798 0   NTclustered gi|1162227035|gb|KY501966.1| 10566 g1007 i0 99.321 95.2650862068966 442 2 95 1 1 442 727 287 Human papillomavirus isolate HPV18 P1-10 replication protein E1 (E1) gene, partial cds blastn 44203 804 0.992537313432836 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
19046594 19046594 PRJNA727760_S_NODE_2315_length_298_cov_0.906667_g2287_i0 PRJNA727760 2315 298 0.906667 2.70186766 Alphapapillomavirus 333750 Viruses Viruses 496 1.06e-135   NTclustered gi|1390389019|gb|MF446038.1| 10566 g2287 i0 99.273 92.2818791946309 275 1 92 1 24 298 311 38 Human papillomavirus isolate Patient V0486 E6 protein (E6) gene, partial cds; and E7 protein (E7) gene, complete cds blastn 27500 501 0.99001996007984 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;