RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA725806", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA725806 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27241841 27241841 PRJNA725806_P_NODE_5263_length_437_cov_2.445000_g4985_i0 PRJNA725806 5263 437 2.445 10.68465 Geranomyces variabilis 109894 Fungi Fungi 102 3.89e-23   NR KAJ3180240.1 109894 g4985 i0 43.5 0.851258581235698 124 69 84.4 1 68 436 8 131 KAJ3180240.1 hypothetical protein HDU87_002117 [Geranomyces variabilis] diamond 372 102 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
31000225 31000225 PRJNA725806_P_NODE_161994_length_163_cov_3.309524_g161692_i0 PRJNA725806 161994 163 3.309524 5.39452412 Piromyces finnis 1754191 Fungi Fungi 42.4 0.0177   NR ORX51829.1 1754191 g161692 i0 54.8 0.570552147239264 31 14 57.1 0 68 160 630 660 ORX51829.1 hypothetical protein BCR36DRAFT_369737 [Piromyces finnis] diamond 93 42.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces finnis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;