RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA725806", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA725806 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25420913 25420913 PRJNA725806_P_NODE_133160_length_177_cov_2.021429_g132858_i0 PRJNA725806 133160 177 2.021429 3.57792933 Pseudomonadati 3379134 Bacteria Bacteria 167 5.12e-37   NTclustered gi|451917417|gb|KC451281.1| 34034 g132858 i0 98.925 53.4745762711864 93 1 53 0 1 93 202 294 Uncultured delta proteobacterium clone RLBp3337 16S ribosomal RNA gene, partial sequence blastn 9465 167 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
28641815 28641815 PRJNA725806_P_NODE_85207_length_209_cov_1.953488_g84906_i0 PRJNA725806 85207 209 1.953488 4.08278992 Pseudomonadota 1224 Bacteria Bacteria 63.9 6.92e-10   NR MFU8803185.1 2740543 g84906 i0 54.8 2.51196172248804 42 19 60.3 0 9 134 294 335 MFU8803185.1 CAP domain-containing protein [Bradymonadaceae bacterium] diamond 525 64.3 0.993779160186625 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae   Bradymonadaceae bacterium
32801852 32801852 PRJNA725806_P_NODE_145320_length_171_cov_1.731343_g145018_i0 PRJNA725806 145320 171 1.731343 2.96059653 Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_6 2026735 Bacteria Bacteria 54.3 6.71e-7   NR OGQ79495.1 1797894 g145018 i0 44.4 0.947368421052632 54 30 94.7 0 4 165 152 205 OGQ79495.1 MAG: hypothetical protein A3F90_11480 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19] diamond 162 54.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;