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contig_metadata

11 rows where bioproject = "PRJNA725806" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA725806 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3263004 3263004 PRJNA725806_P_NODE_108763_length_191_cov_3.987013_g108461_i0 PRJNA725806 108763 191 3.987013 7.61519483 uncultured Trebouxia 1229085 Plants Plants 281 1.92e-71   NTclustered gi|1347308133|gb|MG976278.1| 1229085 g108461 i0 99.359 79.5811518324607 156 0 82 1 21 176 239 393 Uncultured Trebouxia clone 32 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 15200 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxia
4540353 4540353 PRJNA725806_P_NODE_62824_length_231_cov_7.072165_g62526_i0 PRJNA725806 62824 231 7.072165 16.33670115 Fritschiella tuberosa 56004 Plants Plants 52.8 0.021   NTclustered gi|1832106193|gb|MN701159.1| 56004 g62526 i0 100 0.121212121212121 28 0 12 0 203 230 93572 93599 Fritschiella tuberosa chloroplast, partial genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Fritschiellaceae Fritschiella Fritschiella tuberosa
5022798 5022798 PRJNA725806_P_NODE_84784_length_209_cov_4.290698_g84483_i0 PRJNA725806 84784 209 4.290698 8.96755882 Chlorophyta 3041 Plants Plants 387 4.42e-103   NTclustered gi|5733803|gb|AF170792.1| 101468 g84483 i0 100 100.11961722488 209 0 100 0 1 209 798 1006 Uncultured ulvophyte QSSC9L-14 18S ribosomal RNA gene, partial sequence blastn 20925 387 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae       uncultured ulvophyte QSSC9L-14
7090732 7090732 PRJNA725806_P_NODE_74546_length_218_cov_10.513812_g74245_i0 PRJNA725806 74546 218 10.513812 22.92011016 Oedocladium carolinianum 55992 Plants Plants 54.7 0.005   NTclustered gi|2112329342|gb|MT364369.1| 55992 g74245 i0 100 0.394495412844037 29 0 13 0 174 202 15810 15838 Oedocladium carolinianum plastid, complete genome blastn 86 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Oedogoniales Oedogoniaceae Oedocladium Oedocladium carolinianum
7572311 7572311 PRJNA725806_P_NODE_25406_length_299_cov_5.625954_g25109_i0 PRJNA725806 25406 299 5.625954 16.82160246 Eukaryota 2759 Plants Plants 52.8 0.028   NTclustered gi|2082245703|ref|XM_043062514.1| 3055 g25109 i0 100 0.187290969899666 28 0 9 0 44 71 1146 1173 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_05g246250v5), mRNA blastn 56 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10123041 10123041 PRJNA725806_P_NODE_8208_length_393_cov_6.691011_g7923_i0 PRJNA725806 8208 393 6.691011 26.29567323 Botryococcus 38880 Plants Plants 52.8 0.038   NTclustered gi|2724824232|gb|PP746554.1| 38881 g7923 i0 100 0.142493638676845 28 0 7 0 279 306 62298 62325 Botryococcus braunii culture SAG:807-1 mitochondrion, complete genome blastn 56 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Botryococcus Botryococcus braunii
11398104 11398104 PRJNA725806_P_NODE_44109_length_258_cov_3.199095_g43812_i0 PRJNA725806 44109 258 3.199095 8.2536651 Ulva 3118 Plants Plants 130 1.05e-25   NTclustered gi|2095862465|gb|MN853879.1| 3117 g43812 i0 93.182 39.9961240310078 88 6 34 0 154 241 36307 36394 Ulva prolifera chloroplast, complete genome blastn 10319 130 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva prolifera
14740961 14740961 PRJNA725806_P_NODE_34212_length_277_cov_4.287500_g33915_i0 PRJNA725806 34212 277 4.2875 11.876375 Golenkinia longispicula 204992 Plants Plants 60.2 1.52e-4   NTclustered gi|952953748|gb|KT625114.1| 204992 g33915 i0 89.796 0.176895306859206 49 2 18 3 180 228 3954 3909 Golenkinia longispicula clone contig32 chloroplast, partial genome blastn 49 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Golenkiniaceae Golenkinia Golenkinia longispicula
18563611 18563611 PRJNA725806_P_NODE_23575_length_305_cov_3.444030_g23278_i0 PRJNA725806 23575 305 3.44403 10.5042915 Bracteacoccus minor 50037 Plants Plants 52.8 0.028   NTclustered gi|674840682|ref|NC_024756.1| 50037 g23278 i0 100 0.0918032786885246 28 0 9 0 130 157 39746 39719 Bracteacoccus minor strain UTEX B66 mitochondrion, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus minor
27463216 27463216 PRJNA725806_P_NODE_110783_length_190_cov_1.980392_g110481_i0 PRJNA725806 110783 190 1.980392 3.7627448 Trebouxia sp. C 2796353 Plants Plants 42.7 0.0184   NR KAL0038287.1 2905653 g110481 i0 70.8 0.378947368421053 24 7 37.9 0 144 73 195 218 KAL0038287.1 hypothetical protein WJX77_000539 [Trebouxia sp. C0004] diamond 72 42.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004
27557608 27557608 PRJNA725806_P_NODE_176744_length_157_cov_2.358333_g176442_i0 PRJNA725806 176744 157 2.358333 3.70258281 Haematococcus lacustris 44745 Plants Plants 53.1 2.47e-6   NR KAJ9516322.1 44745 g176442 i0 72.5 0.764331210191083 40 11 76.4 0 8 127 161 200 KAJ9516322.1 hypothetical protein QJQ45_001053 [Haematococcus lacustris] diamond 120 53.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;