RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA725806", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA725806 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7090681 7090681 PRJNA725806_P_NODE_55706_length_240_cov_6.379310_g55409_i0 PRJNA725806 55706 240 6.37931 15.310344 Sundstroemia setigera 3005 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|1418587140|ref|NC_037996.1| 3005 g55409 i0 100 0.820833333333333 29 0 12 0 145 173 47988 47960 Rhizosolenia setigera chloroplast, complete genome blastn 197 54.7 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Sundstroemia Sundstroemia setigera
12191342 12191342 PRJNA725806_P_NODE_82490_length_211_cov_4.275862_g82189_i0 PRJNA725806 82490 211 4.275862 9.02206882 Amicula sp. isolate GU52X-4 cfCalB7 3003489 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|2396590600|gb|ON390793.1| 3003489 g82189 i0 92.105 0.180094786729858 38 3 18 0 45 82 115137 115174 Amicula sp. isolate GU52X-4 cfCalB7 voucher Theriot Lab HK478 plastid, complete genome blastn 38 54.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Amicula Amicula sp. isolate GU52X-4 cfCalB7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;