RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA725806", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 9 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 9 ✖

bioproject 1

  • PRJNA725806 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
711742 711742 PRJNA725806_P_NODE_139421_length_174_cov_0.992701_g139119_i0 PRJNA725806 139421 174 0.99270099999999994 1.72729974 Luteolibacter luteus 2728835 Bacteria Bacteria 255 1.04e-63   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g139119 i0 97.333 220.465517241379 150 4 86 0 25 174 3803514 3803663 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 38361 255 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
8365182 8365182 PRJNA725806_P_NODE_327_length_1066_cov_7.145773_g236_i0 PRJNA725806 327 1066 7.145773 76.17394018 Luteolibacter luteus 2728835 Bacteria Bacteria 1799 0   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g236 i0 98.066 278.549718574109 1034 20 97 0 14 1047 3804911 3803878 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 296934 1799 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
13465644 13465644 PRJNA725806_P_NODE_30911_length_285_cov_1.552419_g30614_i0 PRJNA725806 30911 285 1.552419 4.42439415 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 488 1.6899999999999999e-133   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g30614 i0 97.544 92.7543859649123 285 7 100 0 1 285 623 907 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 26435 488 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
19838924 19838924 PRJNA725806_P_NODE_75356_length_218_cov_1.895028_g75055_i0 PRJNA725806 75356 218 1.895028 4.13116104 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 112 2.84e-30   NR MBN9693547.1 2026799 g75055 i0 72.2 1.98165137614679 72 20 99.1 0 217 2 28 99 MBN9693547.1 DUF2200 domain-containing protein [Verrucomicrobiota bacterium] diamond 432 112 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
24146006 24146006 PRJNA725806_P_NODE_44899_length_257_cov_1.036364_g44602_i0 PRJNA725806 44899 257 1.036364 2.66345548 Opitutaceae bacterium 2006848 Bacteria Bacteria 127 1.5299999999999998e-32   NR MCU0794078.1 2006848 g44602 i0 75.6 0.910505836575875 78 19 91.1 0 236 3 346 423 MCU0794078.1 Gfo/Idh/MocA family oxidoreductase [Opitutaceae bacterium] diamond 234 127 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
28757554 28757554 PRJNA725806_P_NODE_8087_length_395_cov_2.368715_g7802_i0 PRJNA725806 8087 395 2.368715 9.35642425 Opitutus sp. 1913982 Bacteria Bacteria 44.7 0.037   NR MCR6655915.1 1913982 g7802 i0 38.3 0.455696202531646 60 35 44.1 1 17 190 72 131 MCR6655915.1 MFS transporter [Opitutus sp.] diamond 180 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
28820432 28820432 PRJNA725806_P_NODE_185188_length_154_cov_1.401709_g184886_i0 PRJNA725806 185188 154 1.401709 2.15863186 Chthoniobacter sp. 2510640 Bacteria Bacteria 90.1 2.03e-19   NR MEZ0256187.1 2510640 g184886 i0 76.5 0.993506493506494 51 12 99.4 0 153 1 213 263 MEZ0256187.1 arylsulfatase [Chthoniobacter sp.] diamond 153 90.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
29420472 29420472 PRJNA725806_P_NODE_100729_length_197_cov_1.225000_g100427_i0 PRJNA725806 100729 197 1.225 2.41325 Opitutia bacterium SCGC AG-212-L18 1799660 Bacteria Bacteria 42.7 0.0203   NR OAI50256.1 1799660 g100427 i0 30.9 0.83756345177665 55 35 83.8 1 11 175 243 294 OAI50256.1 hypothetical protein AYO37_01275 [Opitutia bacterium SCGC AG-212-L18] diamond 165 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium SCGC AG-212-L18
31094864 31094864 PRJNA725806_P_NODE_170575_length_159_cov_7.139344_g170273_i0 PRJNA725806 170575 159 7.139344 11.35155696 Akkermansia sp. 1872421 Bacteria Bacteria 45.8 9.66e-4   NR MBQ3241214.1 1872421 g170273 i0 40.4 0.886792452830189 47 24 88.7 1 12 152 423 465 MBQ3241214.1 hypothetical protein [Akkermansia sp.] diamond 141 45.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;