RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA725806", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 5 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA725806 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13948369 13948369 PRJNA725806_P_NODE_66711_length_227_cov_1.868421_g66411_i0 PRJNA725806 66711 227 1.868421 4.24131567 Bacteria 2 Bacteria Bacteria 52.8 0.02   NTclustered gi|2126063867|gb|CP085689.1| 2886196 g66411 i0 100 0.246696035242291 28 0 12 0 156 183 206049 206076 Lentisphaerae bacterium WC36 chromosome, complete genome blastn 56 52.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium WC36
27526244 27526244 PRJNA725806_P_NODE_80763_length_213_cov_1.289773_g80462_i0 PRJNA725806 80763 213 1.289773 2.74721649 Lentisphaeria bacterium 2053569 Bacteria Bacteria 45.1 0.00381   NR MBR4254143.1 2053569 g80462 i0 48.7 0.549295774647887 39 19 53.5 1 129 16 287 325 MBR4254143.1 glycoside hydrolase family 5 protein [Lentisphaeria bacterium] diamond 117 45.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
29389258 29389258 PRJNA725806_P_NODE_194669_length_150_cov_4.008850_g194367_i0 PRJNA725806 194669 150 4.00885 6.013275 Lentisphaerota bacterium 1932692 Bacteria Bacteria 41.6 0.024   NR MBN2301719.1 1932692 g194367 i0 37 0.92 46 29 92 0 150 13 60 105 MBN2301719.1 hypothetical protein [Lentisphaerota bacterium] diamond 138 41.6 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
31569502 31569502 PRJNA725806_P_NODE_42036_length_261_cov_7.075893_g41739_i0 PRJNA725806 42036 261 7.075893 18.46808073 Victivallales bacterium 2212475 Bacteria Bacteria 43.5 0.023   NR MBQ2335363.1 2212475 g41739 i0 37.3 1.91954022988506 51 31 57.5 1 105 254 213 263 MBQ2335363.1 serine hydrolase [Victivallales bacterium] diamond 501 43.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
32391792 32391792 PRJNA725806_P_NODE_101979_length_196_cov_1.823899_g101677_i0 PRJNA725806 101979 196 1.823899 3.57484204 Victivallis vadensis 172901 Bacteria Bacteria 42.7 0.0205   NR WP_302455191.1 172901 g101677 i0 37.2 1.31632653061224 43 27 65.8 0 183 55 340 382 WP_302455191.1 SulP family inorganic anion transporter, partial [Victivallis vadensis] diamond 258 42.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis vadensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;