RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA725806" and tax_clade = "Methanomada group"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 6 ✖

bioproject 1

  • PRJNA725806 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12191094 12191094 PRJNA725806_P_NODE_133350_length_177_cov_1.535714_g133048_i0 PRJNA725806 133350 177 1.535714 2.71821378 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 298 1.74e-76   NTclustered gi|2874253795|emb|OY969779.1| 176233 g133048 i0 100 2.72881355932203 161 0 91 0 1 161 2013749 2013589 MAG: uncultured Methanobacteriaceae archaeon isolate MFD04716.bin.c.1 genome assembly, chromosome: 1 blastn 483 298 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
13465743 13465743 PRJNA725806_P_NODE_74191_length_219_cov_2.692308_g73890_i0 PRJNA725806 74191 219 2.692308 5.89615452 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 52.8 0.019   NTclustered gi|2874253858|emb|OY969914.1| 176233 g73890 i0 100 0.127853881278539 28 0 13 0 98 125 2140978 2140951 MAG: uncultured Methanobacteriaceae archaeon isolate MFD02416.bin.1.248 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
20320962 20320962 PRJNA725806_P_NODE_81736_length_212_cov_1.960000_g81435_i0 PRJNA725806 81736 212 1.96 4.1552 root 1 Root_unresolved Root_unresolved 54.7 0.005   NTclustered gi|103488723|gb|DQ516776.1| 2190 g81435 i0 100 0.410377358490566 29 0 14 0 176 204 355 327 Methanocaldococcus jannaschii spike-in control MJ-1000-59 genomic sequence blastn 87 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
24938370 24938370 PRJNA725806_P_NODE_38380_length_268_cov_7.324675_g38083_i0 PRJNA725806 38380 268 7.324675 19.630129 Methanobrevibacter olleyae 294671 Archaea Archaea 52.8 0.025   NTclustered gi|998157363|gb|CP014265.1| 294671 g38083 i0 100 0.104477611940299 28 0 10 0 176 203 640239 640212 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
29483583 29483583 PRJNA725806_P_NODE_50430_length_248_cov_2.080569_g50133_i0 PRJNA725806 50430 248 2.080569 5.15981112 Methanosphaera stadtmanae 2317 Archaea Archaea 43.1 0.0285   NR MBE6486030.1 2317 g50133 i0 32 0.907258064516129 75 49 90.7 1 19 243 385 457 MBE6486030.1 hypothetical protein [Methanosphaera stadtmanae] diamond 225 43.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
31569498 31569498 PRJNA725806_P_NODE_36756_length_272_cov_1.804255_g36459_i0 PRJNA725806 36756 272 1.804255 4.9075736 Methanobacterium sp. 2164 Archaea Archaea 42 0.0437   NR MCC7551744.1 2164 g36459 i0 32.1 0.617647058823529 56 38 61.8 0 42 209 42 97 MCC7551744.1 hypothetical protein [Methanobacterium sp.] diamond 168 42 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;