RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA725806", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Shapironibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Shapironibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA725806 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29168294 29168294 PRJNA725806_P_NODE_75629_length_217_cov_9.055556_g75328_i0 PRJNA725806 75629 217 9.055556 19.65055652 Candidatus Shapirobacteria bacterium CG 2053613 Bacteria Bacteria 41.2 0.0426   NR PIS14228.1 1974481 g75328 i0 32.7 0.76036866359447 55 32 76 1 173 9 6 55 PIS14228.1 MAG: hypothetical protein COT65_00010 [Candidatus Shapirobacteria bacterium CG09_land_8_20_14_0_10_47_13] diamond 165 41.2 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium CG09_land_8_20_14_0_10_47_13

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;