RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA724039" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA724039 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8364378 8364378 PRJNA724039_S_NODE_13327_length_175_cov_3.239130_g13120_i0 PRJNA724039 13327 175 3.23913 5.6684775 uncultured Methanoregula sp. 1005933 Archaea Archaea 252 1.3499999999999999e-62   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g13120 i0 92.571 73.3028571428571 175 13 100 0 1 175 3147198 3147024 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 12828 252 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
26608821 26608821 PRJNA724039_S_NODE_13581_length_174_cov_1.036496_g13374_i0 PRJNA724039 13581 174 1.036496 1.80350304 Nitrososphaerota archaeon 2026795 Archaea Archaea 68.9 1.97e-12   NR MEM3062863.1 2026795 g13374 i0 49.1 0.982758620689655 57 28 98.3 1 171 1 38 93 MEM3062863.1 hypothetical protein [Nitrososphaerota archaeon] diamond 171 68.9 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
28188981 28188981 PRJNA724039_S_NODE_15126_length_164_cov_1.881890_g14919_i0 PRJNA724039 15126 164 1.88189 3.0862996 archaeon 1906665 Archaea Archaea 73.6 4.12e-15   NR MDP2438241.1 1906665 g14919 i0 66 0.914634146341463 50 17 91.5 0 15 164 9 58 MDP2438241.1 hypothetical protein [archaeon] diamond 150 73.6 1 Archaea               archaeon
29073525 29073525 PRJNA724039_S_NODE_8288_length_230_cov_1.487047_g8081_i0 PRJNA724039 8288 230 1.487047 3.4202081 Nanobdellota archaeon 2026764 Archaea Archaea 87 7.97e-18   NR MCA9485224.1 2026764 g8081 i0 51.4 1.90434782608696 74 36 96.5 0 227 6 587 660 MCA9485224.1 GTP-binding protein [Nanoarchaeota archaeon] diamond 438 87 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;