RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA724039" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA724039 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
711056 711056 PRJNA724039_S_NODE_13601_length_173_cov_5.875000_g13394_i0 PRJNA724039 13601 173 5.875 10.16375 uncultured Mycoplasma sp. 167967 Bacteria Bacteria 58.4 3.12e-4   NTclustered gi|1775571725|gb|MN692881.1| 167967 g13394 i0 82.09 0.774566473988439 67 12 39 0 10 76 708 642 Uncultured Mycoplasma sp. clone 35a 23S ribosomal RNA gene, partial sequence blastn 134 58.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma uncultured Mycoplasma sp.
9639636 9639636 PRJNA724039_S_NODE_17748_length_151_cov_7.526316_g17541_i0 PRJNA724039 17748 151 7.526316 11.36473716 Mycoplasmopsis citelli 171281 Bacteria Bacteria 69.4 1.22e-7   NTclustered gi|197311440|gb|EU925164.1| 171281 g17541 i0 100 7.98013245033113 37 0 25 0 115 151 2013 2049 Mycoplasma citelli strain RG1D-S 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 1205 69.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis citelli
10915345 10915345 PRJNA724039_S_NODE_8109_length_232_cov_14.543590_g7902_i0 PRJNA724039 8109 232 14.54359 33.7411288 Spiroplasma endosymbiont of Crioceris asparagi 3066286 Bacteria Bacteria 104 5.65e-18   NTclustered gi|2706542422|emb|OZ026475.1| 3066286 g7902 i0 80.714 49.6896551724138 140 22 59 2 96 232 241102 240965 Spiroplasma endosymbiont of Crioceris asparagi isolate 54756 genome assembly, chromosome: 1 blastn 11528 104 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Crioceris asparagi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;