RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA724039" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA724039 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8364543 8364543 PRJNA724039_S_NODE_5987_length_281_cov_3.532787_g5780_i0 PRJNA724039 5987 281 3.532787 9.92713147 uncultured delta proteobacterium 34034 Bacteria Bacteria 296 1.08e-75   NTclustered gi|374854163|dbj|AP011765.1| 34034 g5780 i0 85.866 218.683274021352 283 35 100 4 1 281 14789 15068 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 61450 296 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
17289104 17289104 PRJNA724039_S_NODE_13974_length_171_cov_1.671642_g13767_i0 PRJNA724039 13974 171 1.671642 2.85850782 Persicimonas caeni 2292766 Bacteria Bacteria 54.7 0.004   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g13767 i0 96.97 0.385964912280702 33 0 19 1 130 162 2332106 2332075 Persicimonas caeni strain YN101 chromosome blastn 66 54.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
32043719 32043719 PRJNA724039_S_NODE_15118_length_164_cov_2.047244_g14911_i0 PRJNA724039 15118 164 2.047244 3.35748016 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 2013741 Bacteria Bacteria 45.1 0.00195   NR PKN56436.1 2013741 g14911 i0 60 0.548780487804878 30 11 54.9 1 3 92 419 447 PKN56436.1 MAG: hypothetical protein CVU56_16230, partial [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 90 45.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;