RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA724039", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 16 ✖

tax_clade 1

  • Sar · 16 ✖

bioproject 1

  • PRJNA724039 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1987169 1987169 PRJNA724039_S_NODE_18162_length_150_cov_1.353982_g17955_i0 PRJNA724039 18162 150 1.353982 2.030973 Gymnophrys sp. ATCC 50923 646463 SAR_Eukaryotes SAR_Eukaryotes 171 3.23e-38   NTclustered gi|238617604|gb|FJ973379.1| 646463 g17955 i0 86.875 71.0466666666667 160 11 100 4 1 150 1849 1690 Gymnophrys sp. ATCC 50923 28S ribosomal RNA gene, partial sequence blastn 10657 171 1 Eukaryota Sar   Cercozoa       Gymnophrys Gymnophrys sp. ATCC 50923
2469454 2469454 PRJNA724039_S_NODE_1382_length_690_cov_5.545176_g1215_i0 PRJNA724039 1382 690 5.545176 38.2617144 Cercozoa sp. DMV 1342330 SAR_Eukaryotes SAR_Eukaryotes 355 1.7199999999999995e-118   NR BAN37425.1 1342330 g1215 i0 73.7 2.92173913043478 224 59 97.4 0 1 672 204 427 BAN37425.1 elongation factor 1-alpha [Cercozoa sp. DMV] diamond 2016 355 1 Eukaryota Sar   Cercozoa         Cercozoa sp. DMV
3262404 3262404 PRJNA724039_S_NODE_15403_length_162_cov_4.392000_g15196_i0 PRJNA724039 15403 162 4.392 7.11504 Rosculus piscicus 2231164 SAR_Eukaryotes SAR_Eukaryotes 191 2.74e-44   NTclustered gi|1402550472|gb|MH488758.1| 2231164 g15196 i0 95.763 6.55555555555556 118 5 73 0 1 118 1015 898 Rosculus piscicus isolate GS5C small subunit ribosomal RNA gene, partial sequence blastn 1062 191 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus piscicus
3745983 3745983 PRJNA724039_S_NODE_963_length_898_cov_10.746806_g831_i0 PRJNA724039 963 898 10.746806 96.50631788 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 152 8.69e-32   NTclustered gi|1315527750|gb|MF034900.1| 2065209 g831 i0 90.517 14.1236080178174 116 9 13 2 161 275 8288 8174 Phytocercomonas venanatans 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 12683 152 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Phytocercomonas Phytocercomonas venanatans
4539507 4539507 PRJNA724039_S_NODE_16704_length_156_cov_1.546218_g16497_i0 PRJNA724039 16704 156 1.546218 2.41210008 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 272 9.059999999999999e-69   NTclustered gi|238617605|gb|FJ973380.1| 45107 g16497 i0 98.077 81.7435897435897 156 3 100 0 1 156 1443 1288 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 12752 272 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
6298192 6298192 PRJNA724039_S_NODE_1685_length_607_cov_34.082456_g1506_i0 PRJNA724039 1685 607 34.082456 206.88050792 Cercomonadida 188941 SAR_Eukaryotes SAR_Eukaryotes 161 9.57e-35   NTclustered gi|88792583|gb|DQ386164.1| 372086 g1506 i0 92.241 19.1070840197694 116 6 19 3 413 527 1917 2030 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 11598 161 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
7571991 7571991 PRJNA724039_S_NODE_16926_length_155_cov_1.711864_g16719_i0 PRJNA724039 16926 155 1.711864 2.6533892 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 67.6 4.55e-7   NTclustered gi|1270185586|gb|MG266087.1| 175275 g16719 i0 97.5 7.8 40 0 25 1 22 60 608 569 Uncultured Cercozoa clone MossITSLSU910 large subunit ribosomal RNA gene, partial sequence blastn 1209 67.6 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
8364331 8364331 PRJNA724039_S_NODE_10507_length_200_cov_0.914110_g10300_i0 PRJNA724039 10507 200 0.91411 1.82822 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 196 7.59e-46   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g10300 i0 89.677 39.81 155 14 77 2 47 200 3873 3720 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 7962 196 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
9639620 9639620 PRJNA724039_S_NODE_17008_length_155_cov_0.974576_g16801_i0 PRJNA724039 17008 155 0.974576 1.5105928 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 169 1.21e-37   NTclustered gi|756877536|ref|NC_026310.1| 372086 g16801 i0 86.842 97.8258064516129 152 18 97 2 5 155 3701 3851 Paracercomonas marina strain ATCC 50344 mitochondrion, complete genome blastn 15163 169 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
10915142 10915142 PRJNA724039_S_NODE_13749_length_172_cov_3.488889_g13542_i0 PRJNA724039 13749 172 3.488889 6.00088908 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 86.1 1.42e-12   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g13542 i0 88.571 0.406976744186047 70 8 41 0 44 113 4021 3952 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 70 86.1 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
10915335 10915335 PRJNA724039_S_NODE_7629_length_241_cov_8.426471_g7422_i0 PRJNA724039 7629 241 8.426471 20.30779511 Rosculus sp. VDelafont-2023a 3079709 SAR_Eukaryotes SAR_Eukaryotes 342 1.1499999999999999e-89   NTclustered gi|2589370978|gb|OR644361.1| 3079709 g7422 i0 92.5 5.12863070539419 240 17 99 1 1 239 41 280 Rosculus sp. VDelafont-2023a isolate AJ1 small subunit ribosomal RNA gene, partial sequence blastn 1236 342 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp. VDelafont-2023a
19045888 19045888 PRJNA724039_S_NODE_10895_length_195_cov_10.373418_g10688_i0 PRJNA724039 10895 195 10.373418 20.2281651 Rosculus 373137 SAR_Eukaryotes SAR_Eukaryotes 318 1.5e-82   NTclustered gi|1336609552|gb|MG859939.1| 175275 g10688 i0 100 54.4153846153846 172 0 88 0 24 195 1033 862 Uncultured Cercozoa isolate 1_map+ small subunit ribosomal RNA gene, partial sequence blastn 10611 318 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
19838108 19838108 PRJNA724039_S_NODE_3196_length_408_cov_6.741240_g2989_i0 PRJNA724039 3196 408 6.74124 27.5042592 Rosculus sp. VDelafont-2023a 3079709 SAR_Eukaryotes SAR_Eukaryotes 479 1.5199999999999996e-130   NTclustered gi|2589370978|gb|OR644361.1| 3079709 g2989 i0 88.119 17.5171568627451 404 46 99 2 6 408 259 661 Rosculus sp. VDelafont-2023a isolate AJ1 small subunit ribosomal RNA gene, partial sequence blastn 7147 479 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp. VDelafont-2023a
24937644 24937644 PRJNA724039_S_NODE_17120_length_154_cov_1.923077_g16913_i0 PRJNA724039 17120 154 1.923077 2.96153858 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 152 1.2099999999999999e-32   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g16913 i0 87.786 10.7922077922078 131 14 84 2 23 152 2394 2523 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 1662 152 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
27621035 27621035 PRJNA724039_S_NODE_3464_length_390_cov_2.371105_g3257_i0 PRJNA724039 3464 390 2.371105 9.2473095 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 118 4.35e-31   NR ADK47156.1 323453 g3257 i0 100 0.438461538461538 57 0 43.8 0 389 219 89 145 ADK47156.1 ribosomal protein S23a [Heteromita sp. PRA-74] diamond 171 118 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
32518611 32518611 PRJNA724039_S_NODE_8399_length_228_cov_2.340314_g8192_i0 PRJNA724039 8399 228 2.340314 5.33591592 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 147 6.4e-44   NR ADK26622.1 323453 g8192 i0 93.3 0.986842105263158 75 5 98.7 0 226 2 46 120 ADK26622.1 rps22a [Heteromita sp. PRA-74] diamond 225 147 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;