RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA724039", tax_clade = "SAR86 cluster" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 1 ✖

bioproject 1

  • PRJNA724039 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17771862 17771862 PRJNA724039_S_NODE_13854_length_172_cov_1.400000_g13647_i0 PRJNA724039 13854 172 1.4 2.408 Bacteria 2 Bacteria Bacteria 56.5 0.001   NTclustered gi|2308952804|emb|OX044367.1| 648174 g13647 i0 92.683 0.703488372093023 41 0 22 2 24 61 522888 522848 MAG: uncultured SAR86 cluster bacterium isolate A_MB256 genome assembly, chromosome: A_MB256_contig-1 blastn 121 56.5 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       uncultured SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;