RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA724039", tax_clade = "Opisthokonta" and tax_phylum = "Cnidaria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 10 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 10 ✖

bioproject 1

  • PRJNA724039 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
711177 711177 PRJNA724039_S_NODE_4141_length_350_cov_3.162939_g3934_i0 PRJNA724039 4141 350 3.162939 11.0702865 Craspedacusta sowerbii 128124 Cnidaria other_Eukaryota 647 0   NTclustered gi|2070644854|gb|MZ508275.1| 128124 g3934 i0 100 17.4914285714286 350 0 100 0 1 350 3393 3742 Craspedacusta sowerbii isolate JD411 mitochondrion, partial genome blastn 6122 647 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Limnomedusae Olindiidae Craspedacusta Craspedacusta sowerbii
711275 711275 PRJNA724039_S_NODE_9601_length_210_cov_6.786127_g9394_i0 PRJNA724039 9601 210 6.786127 14.2508667 Craspedacusta sowerbii 128124 Cnidaria other_Eukaryota 383 5.75e-102   NTclustered gi|2086859716|gb|MZ569029.1| 128124 g9394 i0 99.524 16.7285714285714 210 1 100 0 1 210 12794 12585 Craspedacusta sowerbii isolate BT3 mitochondrion, complete genome blastn 3513 383 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Limnomedusae Olindiidae Craspedacusta Craspedacusta sowerbii
3745940 3745940 PRJNA724039_S_NODE_4283_length_342_cov_13.439344_g4076_i0 PRJNA724039 4283 342 13.439344 45.96255648 Metazoa 33208 Cnidaria other_Eukaryota 65.8 4.15e-6   NTclustered gi|2917940724|emb|OZ237563.1| 6108 g4076 i0 97.368 3.80409356725146 38 1 11 0 80 117 9307223 9307260 Anemonia sulcata genome assembly, chromosome: 9 blastn 1301 65.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
16013682 16013682 PRJNA724039_S_NODE_2313_length_494_cov_21.903720_g2113_i0 PRJNA724039 2313 494 21.90372 108.2043768 Craspedacusta sowerbii 128124 Cnidaria other_Eukaryota 833 0   NTclustered gi|1100820113|gb|KY083050.1| 128124 g2113 i0 97.358 76.417004048583 492 9 99 3 3 494 757 270 Craspedacusta sowerbyi isolate AGC1001 large subunit ribosomal RNA gene, partial sequence blastn 37750 833 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Limnomedusae Olindiidae Craspedacusta Craspedacusta sowerbii
18562857 18562857 PRJNA724039_S_NODE_1555_length_637_cov_5.818333_g1381_i0 PRJNA724039 1555 637 5.818333 37.06278121 Craspedacusta sowerbii 128124 Cnidaria other_Eukaryota 1164 0   NTclustered gi|2070644870|gb|MZ508276.1| 128124 g1381 i0 99.686 42.6467817896389 637 0 100 1 1 637 12104 11470 Craspedacusta sowerbii isolate RA802 mitochondrion, partial genome blastn 27166 1164 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Limnomedusae Olindiidae Craspedacusta Craspedacusta sowerbii
21113812 21113812 PRJNA724039_S_NODE_6997_length_255_cov_2.128440_g6790_i0 PRJNA724039 6997 255 2.12844 5.427522 Craspedacusta sowerbii 128124 Cnidaria other_Eukaryota 472 1.5e-128   NTclustered gi|1100820113|gb|KY083050.1| 128124 g6790 i0 100 99.9098039215686 255 0 100 0 1 255 1934 1680 Craspedacusta sowerbyi isolate AGC1001 large subunit ribosomal RNA gene, partial sequence blastn 25477 472 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Limnomedusae Olindiidae Craspedacusta Craspedacusta sowerbii
24937561 24937561 PRJNA724039_S_NODE_12020_length_185_cov_4.804054_g11813_i0 PRJNA724039 12020 185 4.804054 8.8874999 Craspedacusta sowerbii 128124 Cnidaria other_Eukaryota 335 1.4e-87   NTclustered gi|1100820113|gb|KY083050.1| 128124 g11813 i0 99.459 78.1621621621622 185 0 100 1 1 185 770 953 Craspedacusta sowerbyi isolate AGC1001 large subunit ribosomal RNA gene, partial sequence blastn 14460 335 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Limnomedusae Olindiidae Craspedacusta Craspedacusta sowerbii
27030926 27030926 PRJNA724039_S_NODE_6902_length_257_cov_2.481818_g6695_i0 PRJNA724039 6902 257 2.481818 6.37827226 Metazoa 33208 Cnidaria other_Eukaryota 120 2.65e-32   NR XP_001637830.2 45351 g6695 i0 70.6 21.9805447470817 85 23 98.1 2 254 3 68 151 XP_001637830.2 40S ribosomal protein S15 [Nematostella vectensis] diamond 5649 120 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Edwardsiidae Nematostella Nematostella vectensis
29451880 29451880 PRJNA724039_S_NODE_16510_length_157_cov_1.350000_g16303_i0 PRJNA724039 16510 157 1.35 2.1195 Exaiptasia diaphana 2652724 Cnidaria other_Eukaryota 56.6 1.48e-7   NR KXJ14349.1 2652724 g16303 i0 54 2.86624203821656 50 21 95.5 1 157 8 187 234 KXJ14349.1 Leucine--tRNA ligase, cytoplasmic [Exaiptasia diaphana] diamond 450 56.6 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Aiptasiidae Exaiptasia Exaiptasia diaphana
31885427 31885427 PRJNA724039_S_NODE_13477_length_174_cov_3.167883_g13270_i0 PRJNA724039 13477 174 3.167883 5.51211642 Clytia hemisphaerica 252671 Cnidaria other_Eukaryota 82.8 8.36e-17   NR XP_066933787.1 252671 g13270 i0 74.5 4.60344827586207 55 14 94.8 0 3 167 310 364 XP_066933787.1 large ribosomal subunit protein uL3-like [Clytia hemisphaerica] diamond 801 82.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia hemisphaerica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;