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contig_metadata

29 rows where bioproject = "PRJNA724039", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 29 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 29 ✖

bioproject 1

  • PRJNA724039 · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
711033 711033 PRJNA724039_S_NODE_12081_length_185_cov_1.831081_g11874_i0 PRJNA724039 12081 185 1.831081 3.38749985 Mus musculus 10090 Chordata Chordata 342 8.369999999999999e-90   NTclustered gi|1032033214|gb|KX121610.1| 10090 g11874 i0 100 41.1405405405405 185 0 100 0 1 185 1361 1545 Mus musculus clone contig 1 chromocenter region genomic sequence blastn 7611 342 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
711075 711075 PRJNA724039_S_NODE_15121_length_164_cov_2.015748_g14914_i0 PRJNA724039 15121 164 2.015748 3.30582672 Mus musculus 10090 Chordata Chordata 303 3.42e-78   NTclustered gi|2510669837|gb|OQ871514.1| 10090 g14914 i0 100 38.9329268292683 164 0 100 0 1 164 38958 38795 Mus musculus clone BAC 18_2 45S ribosomal RNA and 18S ribosomal RNA genes, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, 3' and 5' external transcribed spacers, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 6385 303 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
711096 711096 PRJNA724039_S_NODE_16061_length_159_cov_1.745902_g15854_i0 PRJNA724039 16061 159 1.745902 2.77598418 Mus musculus 10090 Chordata Chordata 294 1.98e-75   NTclustered gi|2510669837|gb|OQ871514.1| 10090 g15854 i0 100 46.0314465408805 159 0 100 0 1 159 2131 1973 Mus musculus clone BAC 18_2 45S ribosomal RNA and 18S ribosomal RNA genes, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, 3' and 5' external transcribed spacers, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 7319 294 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
1987163 1987163 PRJNA724039_S_NODE_17662_length_152_cov_1.478261_g17455_i0 PRJNA724039 17662 152 1.478261 2.24695672 Crossobamon orientalis 401522 Chordata Chordata 63.9 5.74e-6   NTclustered gi|1952944379|dbj|AB738947.1| 401522 g17455 i0 97.297 0.243421052631579 37 1 24 0 1 37 9799 9763 Crossobamon orientalis mitochondrial DNA, nearly complete genome, isolate: Cori1 blastn 37 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Crossobamon Crossobamon orientalis
3262578 3262578 PRJNA724039_S_NODE_7823_length_238_cov_1.402985_g7616_i0 PRJNA724039 7823 238 1.402985 3.3391043 Mus musculus 10090 Chordata Chordata 436 5.049999999999999e-118   NTclustered gi|2510669768|gb|OQ871509.1| 10090 g7616 i0 100 63.9915966386555 236 0 99 0 3 238 42924 42689 Mus musculus clone BAC 10_3 45S ribosomal RNA and 18S ribosomal RNA genes, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, 3' and 5' external transcribed spacers, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 15230 436 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
3262582 3262582 PRJNA724039_S_NODE_8003_length_234_cov_5.390863_g7796_i0 PRJNA724039 8003 234 5.390863 12.61461942 Erpetoichthys calabaricus 27687 Chordata Chordata 185 1.9799999999999994e-42   NTclustered gi|2327581580|ref|XM_051922993.1| 27687 g7796 i0 84.08 7.6965811965812 201 23 85 5 37 234 1080 1274 PREDICTED: Erpetoichthys calabaricus E3 SUMO-protein ligase ZBED1-like (LOC127526706), mRNA blastn 1801 185 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
5814611 5814611 PRJNA724039_S_NODE_1085_length_830_cov_8.137453_g942_i0 PRJNA724039 1085 830 8.137453 67.5408599 Mus musculus 10090 Chordata Chordata 388 5.6e-103   NTclustered gi|2904935199|gb|PQ738121.1| 10090 g942 i0 77.161 0.933734939759036 775 110 91 47 15 773 27 750 Mus musculus lncRNA, complete sequence blastn 775 388 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
5814616 5814616 PRJNA724039_S_NODE_11025_length_194_cov_2.777070_g10818_i0 PRJNA724039 11025 194 2.77707 5.3875158 Redunca fulvorufula 59555 Chordata Chordata 52.8 0.017   NTclustered gi|37545372|gb|AY122050.1| 59555 g10818 i0 100 0.288659793814433 28 0 14 0 11 38 177 204 Redunca fulvorufula 16S ribosomal RNA gene, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Redunca Redunca fulvorufula
7089878 7089878 PRJNA724039_S_NODE_16806_length_155_cov_5.576271_g16599_i0 PRJNA724039 16806 155 5.576271 8.64322005 Polypterus senegalus 55291 Chordata Chordata 187 3.3499999999999995e-43   NTclustered gi|1993956580|ref|XM_039752052.1| 55291 g16599 i0 91.241 16.4322580645161 137 12 88 0 19 155 2674 2538 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120528061), transcript variant X1, mRNA blastn 2547 187 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
7089959 7089959 PRJNA724039_S_NODE_4886_length_317_cov_4.210714_g4679_i0 PRJNA724039 4886 317 4.210714 13.34796338 Mus musculus 10090 Chordata Chordata 265 3.5e-66   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g4679 i0 82.428 0.987381703470032 313 46 97 9 10 317 336 28 Mus musculus lncRNA390 lncRNA, complete sequence blastn 313 265 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
7090055 7090055 PRJNA724039_S_NODE_9366_length_213_cov_2.750000_g9159_i0 PRJNA724039 9366 213 2.75 5.8575 Mus musculus 10090 Chordata Chordata 394 2.7e-105   NTclustered gi|1032033214|gb|KX121610.1| 10090 g9159 i0 100 41 213 0 100 0 1 213 1579 1791 Mus musculus clone contig 1 chromocenter region genomic sequence blastn 8733 394 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
8364450 8364450 PRJNA724039_S_NODE_17947_length_151_cov_1.166667_g17740_i0 PRJNA724039 17947 151 1.166667 1.76166717 Mus musculus 10090 Chordata Chordata 279 5.19e-71   NTclustered gi|84365506|emb|CT010467.6| 10090 g17740 i0 100 42 151 0 100 0 1 151 68163 68013 Mouse DNA sequence from clone RP23-81C12 on chromosome 17, complete sequence blastn 6342 279 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
11397730 11397730 PRJNA724039_S_NODE_12269_length_183_cov_4.143836_g12062_i0 PRJNA724039 12269 183 4.143836 7.58321988 root 1 Root_unresolved Root_unresolved 298 1.81e-76   NTclustered gi|846388237|dbj|LC062069.1| 10090 g12062 i0 99.394 89.6229508196721 165 0 90 1 1 164 391 227 Mus musculus mitochondrion DNA, including 12S rRNA, tRNA-Val, 16S rRNA, tRNA-Leu genes, complete sequence, sequence_id: (92..2715)_2 blastn 16401 298 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
12190373 12190373 PRJNA724039_S_NODE_12970_length_178_cov_1.432624_g12763_i0 PRJNA724039 12970 178 1.432624 2.55007072 Chaetura pelagica 8897 Chordata Chordata 95.3 2.47e-15   NTclustered gi|701430398|ref|XM_010005445.1| 8897 g12763 i0 80 0.730337078651685 130 24 72 2 49 177 630 502 PREDICTED: Chaetura pelagica ribosomal protein S20 (RPS20), mRNA blastn 130 95.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Chaetura Chaetura pelagica
14740264 14740264 PRJNA724039_S_NODE_4232_length_345_cov_7.970779_g4025_i0 PRJNA724039 4232 345 7.970779 27.49918755 Mus musculus 10090 Chordata Chordata 630 3.299999999999999e-176   NTclustered gi|2510669837|gb|OQ871514.1| 10090 g4025 i0 99.71 41.9130434782609 345 0 100 1 1 345 3372 3029 Mus musculus clone BAC 18_2 45S ribosomal RNA and 18S ribosomal RNA genes, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, 3' and 5' external transcribed spacers, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 14460 630 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
16013752 16013752 PRJNA724039_S_NODE_5653_length_291_cov_2.590551_g5446_i0 PRJNA724039 5653 291 2.590551 7.53850341 Mus musculus 10090 Chordata Chordata 538 1.6999999999999994e-148   NTclustered gi|2548330513|gb|OQ915115.1| 10090 g5446 i0 100 42.2474226804124 291 0 100 0 1 291 3343 3633 Mus musculus clone BAC JH_40 45S ribosomal RNA and 18S ribosomal RNA genes, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, 3' and 5' external transcribed spacers, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 12294 538 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
18563021 18563021 PRJNA724039_S_NODE_8115_length_232_cov_10.153846_g7908_i0 PRJNA724039 8115 232 10.153846 23.55692272 Pyrrhula murina 928672 Chordata Chordata 52.8 0.021   NTclustered gi|2920008266|emb|OZ238999.1| 928672 g7908 i0 96.875 0.137931034482759 32 0 13 1 174 204 48282346 48282377 Pyrrhula murina genome assembly, chromosome: 5 blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Pyrrhula Pyrrhula murina
22388526 22388526 PRJNA724039_S_NODE_15858_length_160_cov_2.105691_g15651_i0 PRJNA724039 15858 160 2.105691 3.3691056 Mus musculus 10090 Chordata Chordata 296 5.55e-76   NTclustered gi|186967918|gb|EU433313.1| 10090 g15651 i0 100 72.2375 160 0 100 0 1 160 993 834 Mus musculus isolate vrDNA-6B external transcribed spacer, partial sequence blastn 11558 296 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
23664110 23664110 PRJNA724039_S_NODE_12179_length_184_cov_2.346939_g11972_i0 PRJNA724039 12179 184 2.346939 4.31836776 Heliangelus exortis 472823 Chordata Chordata 137 4.21e-28   NTclustered gi|2920741532|ref|XM_071729291.1| 472823 g11972 i0 80.925 22.2826086956522 173 33 94 0 12 184 914 742 PREDICTED: Heliangelus exortis peptidylprolyl isomerase A (PPIA), mRNA blastn 4100 137 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Trochilidae Heliangelus Heliangelus exortis
23664170 23664170 PRJNA724039_S_NODE_16439_length_157_cov_1.925000_g16232_i0 PRJNA724039 16439 157 1.925 3.02225 Mus musculus 10090 Chordata Chordata 289 9.07e-74   NTclustered gi|1032033214|gb|KX121610.1| 10090 g16232 i0 100 40.3885350318471 156 0 99 0 2 157 1917 2072 Mus musculus clone contig 1 chromocenter region genomic sequence blastn 6341 289 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
24145696 24145696 PRJNA724039_S_NODE_2359_length_490_cov_2.476821_g2159_i0 PRJNA724039 2359 490 2.476821 12.1364229 root 1 Root_unresolved Root_unresolved 699 0   NTclustered gi|2038160683|ref|XM_018255050.2| 8355 g2159 i0 99.225 27.7959183673469 387 3 79 0 104 490 168 554 PREDICTED: Xenopus laevis nucleophosmin/nucleoplasmin 2 S homeolog (npm2.S), transcript variant X1, mRNA blastn 13620 699 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
24937729 24937729 PRJNA724039_S_NODE_5360_length_301_cov_2.045455_g5153_i0 PRJNA724039 5360 301 2.045455 6.15681955 Mus musculus 10090 Chordata Chordata 556 4.87e-154   NTclustered gi|1032033214|gb|KX121610.1| 10090 g5153 i0 100 40.312292358804 301 0 100 0 1 301 2411 2711 Mus musculus clone contig 1 chromocenter region genomic sequence blastn 12134 556 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28168059 28168059 PRJNA724039_S_NODE_9465_length_212_cov_1.988571_g9258_i0 PRJNA724039 9465 212 1.988571 4.21577052 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.1 6.300000000000001e-22   NR CAL5908699.1 7748 g9258 i0 70 108.962264150943 70 21 99.1 0 3 212 126 195 CAL5908699.1 unnamed protein product [Lampetra fluviatilis] diamond 23100 95.9 0.991657977059437 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
29041934 29041934 PRJNA724039_S_NODE_15368_length_163_cov_1.142857_g15161_i0 PRJNA724039 15368 163 1.142857 1.86285691 Polypterus senegalus 55291 Chordata Chordata 41.2 0.0454   NR XP_039608797.1 55291 g15161 i0 81 0.386503067484663 21 4 38.7 0 50 112 490 510 XP_039608797.1 uncharacterized protein LOC120528708 [Polypterus senegalus] diamond 63 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29231363 29231363 PRJNA724039_S_NODE_3069_length_417_cov_5.097368_g2862_i0 PRJNA724039 3069 417 5.097368 21.25602456 Erpetoichthys calabaricus 27687 Chordata Chordata 133 6.689999999999999e-35   NR XP_051791274.1 27687 g2862 i0 77.8 5.88489208633094 90 19 64 1 20 286 115 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2454 133 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
30662872 30662872 PRJNA724039_S_NODE_16133_length_159_cov_0.950820_g15926_i0 PRJNA724039 16133 159 0.95082 1.5118038 Metazoa 33208 Chordata Chordata 49.7 4.18e-5   NR XP_039263030.1 7725 g15926 i0 55.3 5.50943396226415 47 21 88.7 0 148 8 1027 1073 XP_039263030.1 cullin-associated NEDD8-dissociated protein 1-like [Styela clava] diamond 876 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
30968659 30968659 PRJNA724039_S_NODE_1794_length_581_cov_4.806985_g1602_i0 PRJNA724039 1794 581 4.806985 27.92858285 Polypterus senegalus 55291 Chordata Chordata 62 1.73e-7   NR KAG2469303.1 55291 g1602 i0 70.7 0.635111876075731 41 12 21.2 0 213 335 11 51 KAG2469303.1 SRPK2 kinase, partial [Polypterus senegalus] diamond 369 62 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31042415 31042415 PRJNA724039_S_NODE_6215_length_274_cov_2.181435_g6008_i0 PRJNA724039 6215 274 2.181435 5.9771319 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 144 3.1399999999999993e-40   NR XP_069097964.1 8319 g6008 i0 76.7 73.8722627737226 90 21 98.5 0 1 270 20 109 XP_069097964.1 large ribosomal subunit protein uL18B-like [Pleurodeles waltl] diamond 20241 144 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
32075348 32075348 PRJNA724039_S_NODE_16118_length_159_cov_1.188525_g15911_i0 PRJNA724039 16118 159 1.188525 1.88975475 Ciona intestinalis 7719 Chordata Chordata 77.4 6.56e-15   NR XP_002131800.1 7719 g15911 i0 70 1.88679245283019 50 15 94.3 0 150 1 53 102 XP_002131800.1 calreticulin [Ciona intestinalis] diamond 300 77.4 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;