RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA724039", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA724039 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27652646 27652646 PRJNA724039_S_NODE_13824_length_172_cov_1.718519_g13617_i0 PRJNA724039 13824 172 1.718519 2.95585268 Ignavibacteria bacterium 2053306 Bacteria Bacteria 70.1 1.76e-12   NR MDP3443447.1 2053306 g13617 i0 91.2 0.593023255813954 34 3 59.3 0 2 103 251 284 MDP3443447.1 TIGR04219 family outer membrane beta-barrel protein [Ignavibacteria bacterium] diamond 102 70.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30494687 30494687 PRJNA724039_S_NODE_13953_length_171_cov_1.947761_g13746_i0 PRJNA724039 13953 171 1.947761 3.33067131 Ignavibacteria bacterium 2053306 Bacteria Bacteria 110 1.0600000000000002e-27   NR MDP3443447.1 2053306 g13746 i0 90.9 0.964912280701754 55 5 96.5 0 170 6 25 79 MDP3443447.1 TIGR04219 family outer membrane beta-barrel protein [Ignavibacteria bacterium] diamond 165 110 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30905438 30905438 PRJNA724039_S_NODE_9994_length_206_cov_1.579882_g9787_i0 PRJNA724039 9994 206 1.579882 3.25455692 Ignavibacteria bacterium 2053306 Bacteria Bacteria 131 1.1e-35   NR MDP3443447.1 2053306 g9787 i0 97.1 0.990291262135922 68 2 99 0 205 2 136 203 MDP3443447.1 TIGR04219 family outer membrane beta-barrel protein [Ignavibacteria bacterium] diamond 204 131 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;