RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA724011", tax_phylum = "Promethearchaeota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Promethearchaeota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA724011 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30652309 30652309 PRJNA724011_P_NODE_75213_length_288_cov_1.255814_g74190_i0 PRJNA724011 75213 288 1.255814 3.61674432 Promethearchaeota archaeon CR_4 1849166 Archaea Archaea 57.8 3.15e-7   NR OLS14679.1 1849166 g74190 i0 44.3 0.729166666666667 70 39 72.9 0 278 69 204 273 OLS14679.1 MAG: arsenite efflux membrane protein ArsB [Promethearchaeota archaeon CR_4] diamond 210 57.8 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon CR_4
31105033 31105033 PRJNA724011_P_NODE_101155_length_246_cov_1.335260_g100132_i0 PRJNA724011 101155 246 1.33526 3.2847396 root 1 Root_unresolved Root_unresolved 58.2 1.25e-7   NR KKK42703.1 1538547 g100132 i0 38 3.86585365853659 79 45 96.3 2 245 9 119 193 KKK42703.1 MAG: hypothetical protein Lokiarch_32970 [Candidatus Lokiarchaeum sp. GC14_75] diamond 951 58.5 0.994871794871795 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Candidatus Lokiarchaeum Candidatus Lokiarchaeum sp. GC14_75
32138524 32138524 PRJNA724011_P_NODE_102278_length_246_cov_0.890173_g101255_i0 PRJNA724011 102278 246 0.890173 2.18982558 Promethearchaeia archaeon 3067280 Archaea Archaea 71.6 2.45e-12   NR MFO8018952.1 3067280 g101255 i0 41.6 0.939024390243902 77 33 93.9 2 231 1 336 400 MFO8018952.1 trehalase family glycosidase [Promethearchaeia archaeon] diamond 231 71.6 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia       Promethearchaeia archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;