RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where bioproject = "PRJNA724011" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724011 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12190146 12190146 PRJNA724011_P_NODE_72130_length_295_cov_1.387387_g71107_i0 PRJNA724011 72130 295 1.387387 4.09279165 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 448 2.9899999999999997e-121   NTclustered gi|971146634|emb|LN879502.1| 389348 g71107 i0 94.218 133.396610169492 294 16 99 1 1 293 1249812 1249519 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 39352 448 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
17771723 17771723 PRJNA724011_P_NODE_72514_length_294_cov_1.402715_g71491_i0 PRJNA724011 72514 294 1.402715 4.1239821 Pseudomonadati 3379134 Bacteria Bacteria 414 3.02e-111   NTclustered gi|2082223669|gb|CP075585.1| 225148 g71491 i0 94.139 147.214285714286 273 14 93 2 14 285 1020019 1019748 Candidatus Rhabdochlamydia porcellionis strain 15C chromosome, complete genome blastn 43281 414 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis
18562238 18562238 PRJNA724011_P_NODE_1355_length_2303_cov_8.655157_g1144_i0 PRJNA724011 1355 2303 8.655157 199.32826571 root 1 Root_unresolved Root_unresolved 792 7.12e-280   NR WP_059059927.1 389348 g1144 i0 62.9 9.48719062092922 598 212 77.9 5 1959 166 3 590 WP_059059927.1 phosphoenolpyruvate carboxykinase (GTP) [Candidatus Protochlamydia naegleriophila] diamond 21849 792 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
27020561 27020561 PRJNA724011_P_NODE_76602_length_285_cov_1.235849_g75579_i0 PRJNA724011 76602 285 1.235849 3.52216965 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 45.1 0.00852   NR HNA62936.1 2047756 g75579 i0 44.6 0.589473684210526 56 31 58.9 0 6 173 172 227 HNA62936.1 serine protease [Rhabdochlamydiaceae bacterium] diamond 168 45.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
27052280 27052280 PRJNA724011_P_NODE_70462_length_299_cov_1.938053_g69439_i0 PRJNA724011 70462 299 1.938053 5.79477847 Chlamydiia bacterium 2052156 Bacteria Bacteria 116 8.7e-28   NR MCB1072267.1 2052156 g69439 i0 58.3 0.963210702341137 96 40 96.3 0 8 295 239 334 MCB1072267.1 adenylyl cyclase [Chlamydiia bacterium] diamond 288 116 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
27715992 27715992 PRJNA724011_P_NODE_83304_length_270_cov_2.370558_g82281_i0 PRJNA724011 83304 270 2.370558 6.4005066 Chlamydiae bacterium CG1 2081524 Bacteria Bacteria 63.9 1.48e-9   NR PIS00663.1 1973935 g82281 i0 55.8 0.577777777777778 52 22 57.8 1 3 158 283 333 PIS00663.1 MAG: SAM-dependent methyltransferase, partial [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9] diamond 156 63.9 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9
28483797 28483797 PRJNA724011_P_NODE_74566_length_289_cov_1.837963_g73543_i0 PRJNA724011 74566 289 1.837963 5.31171307 Chlamydiia 204429 Bacteria Bacteria 146 2.69e-38   NR NCF70144.1 2047757 g73543 i0 71.6 8.87543252595156 95 26 98.6 1 285 1 325 418 NCF70144.1 endopeptidase La [Chlamydiales bacterium] diamond 2565 146 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29073482 29073482 PRJNA724011_P_NODE_83048_length_271_cov_1.459596_g82025_i0 PRJNA724011 83048 271 1.459596 3.95550516 Chlamydiota bacterium 2081524 Bacteria Bacteria 43.1 0.0145   NR MBM3183942.1 2081524 g82025 i0 45.2 0.907749077490775 42 23 46.5 0 2 127 90 131 MBM3183942.1 DUF1761 domain-containing protein [Chlamydiota bacterium] diamond 246 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
29136685 29136685 PRJNA724011_P_NODE_70209_length_300_cov_1.352423_g69186_i0 PRJNA724011 70209 300 1.352423 4.057269 Chlamydiae bacterium RIFCSPHIGHO2_ 2081524 Bacteria Bacteria 122 1.5199999999999998e-31   NR OGN56797.1 1797598 g69186 i0 57.3 1.8 89 38 89 0 268 2 15 103 OGN56797.1 MAG: stomatin 2 [Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39] diamond 540 122 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39
29168188 29168188 PRJNA724011_P_NODE_73789_length_291_cov_1.412844_g72766_i0 PRJNA724011 73789 291 1.412844 4.11137604 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 80.5 1.05e-15   NR MEI8365875.1 2052176 g72766 i0 56.9 0.670103092783505 65 27 67 1 272 78 208 271 MEI8365875.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 195 80.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29672885 29672885 PRJNA724011_P_NODE_89070_length_259_cov_1.655914_g88047_i0 PRJNA724011 89070 259 1.655914 4.28881726 Candidatus Neptunochlamydia vexilliferae 1651774 Bacteria Bacteria 45.8 0.00388   NR WP_194848191.1 1651774 g88047 i0 35.7 0.810810810810811 70 45 81.1 0 7 216 1158 1227 WP_194848191.1 putative nucleotidyltransferase substrate binding domain-containing protein [Candidatus Neptunochlamydia vexilliferae] diamond 210 45.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia vexilliferae
30589154 30589154 PRJNA724011_P_NODE_32273_length_483_cov_1.112195_g31254_i0 PRJNA724011 32273 483 1.112195 5.37190185 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 59.3 6.93e-7   NR MBA3720790.1 2052176 g31254 i0 38.9 0.447204968944099 72 43 44.7 1 387 172 131 201 MBA3720790.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 216 59.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31189276 31189276 PRJNA724011_P_NODE_8155_length_1108_cov_26.283092_g7447_i0 PRJNA724011 8155 1108 26.283092 291.21665936 Chlamydiales bacterium SCGC AG-11 2047757 Bacteria Bacteria 48.9 0.0283   NR SCA63082.1 1871324 g7447 i0 30.3 0.240974729241877 89 54 21.9 1 616 858 259 347 SCA63082.1 Uncharacterized protein SCG7109_AH_00380 [Chlamydiales bacterium SCGC AG-110-M15] diamond 267 48.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium SCGC AG-110-M15
31411034 31411034 PRJNA724011_P_NODE_44436_length_394_cov_1.239875_g43413_i0 PRJNA724011 44436 394 1.239875 4.8851075 Chlamydiales bacterium 2047757 Bacteria Bacteria 124 1.93e-30   NR MFT5050156.1 2047757 g43413 i0 46.7 3.67005076142132 120 64 91.4 0 18 377 259 378 MFT5050156.1 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein [Chlamydiales bacterium] diamond 1446 124 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31790368 31790368 PRJNA724011_P_NODE_69637_length_301_cov_2.293860_g68614_i0 PRJNA724011 69637 301 2.29386 6.9045186 Waddliaceae bacterium 2026802 Bacteria Bacteria 124 2.47e-31   NR MBB65584.1 2026802 g68614 i0 58.8 3.87707641196013 97 40 96.7 0 301 11 293 389 MBB65584.1 aspartate aminotransferase family protein [Waddliaceae bacterium] diamond 1167 124 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
31980259 31980259 PRJNA724011_P_NODE_45798_length_386_cov_4.099042_g44775_i0 PRJNA724011 45798 386 4.099042 15.82230212 Chlamydiales bacterium 2047757 Bacteria Bacteria 110 4.42e-28   NR MCP5470420.1 2047757 g44775 i0 48.7 1.8419689119171 117 60 90.9 0 6 356 1 117 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 711 110 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32043578 32043578 PRJNA724011_P_NODE_109938_length_241_cov_0.916667_g108915_i0 PRJNA724011 109938 241 0.916667 2.20916747 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 75.1 5.05e-14   NR MBX9924004.1 2047756 g108915 i0 45.6 0.983402489626556 79 40 98.3 1 241 5 77 152 MBX9924004.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 237 75.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
32328709 32328709 PRJNA724011_P_NODE_14059_length_817_cov_3.040323_g13130_i0 PRJNA724011 14059 817 3.040323 24.83943891 Parachlamydiales bacterium 2052178 Bacteria Bacteria 120 5.72e-28   NR MBX7066126.1 2052178 g13130 i0 40.7 1.40636474908201 182 97 66.8 5 206 751 133 303 MBX7066126.1 NAD(P)-binding domain-containing protein [Parachlamydiales bacterium] diamond 1149 120 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
32328749 32328749 PRJNA724011_P_NODE_47539_length_378_cov_1.045902_g46516_i0 PRJNA724011 47539 378 1.045902 3.95350956 Chlamydiia bacterium 2052156 Bacteria Bacteria 56.6 1.96e-6   NR MCB1113801.1 2052156 g46516 i0 47.1 1.30952380952381 70 27 55.6 3 211 2 164 223 MCB1113801.1 hypothetical protein [Chlamydiia bacterium] diamond 495 56.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;