RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

34 rows where bioproject = "PRJNA724011" and tax_phylum = "Brachiopoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 34 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724011 · 34 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4539306 4539306 PRJNA724011_P_NODE_85744_length_266_cov_1.196891_g84721_i0 PRJNA724011 85744 266 1.196891 3.18373006 Lingula anatina 7574 Brachiopoda other_Eukaryota 58.4 5.23e-4   NTclustered gi|919028235|ref|XM_013542508.1| 7574 g84721 i0 100 0.116541353383459 31 0 12 0 32 62 524 494 PREDICTED: Lingula anatina peflin-like (LOC106164559), mRNA blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
5022249 5022249 PRJNA724011_P_NODE_64064_length_317_cov_1.262295_g63041_i0 PRJNA724011 64064 317 1.262295 4.00147515 Opisthokonta 33154 Brachiopoda other_Eukaryota 73.1 2.28e-8   NTclustered gi|918999843|ref|XM_013545706.1| 7574 g63041 i0 84.722 0.870662460567823 72 11 23 0 102 173 5428 5499 PREDICTED: Lingula anatina DNA-directed RNA polymerase II subunit RPB1 (LOC106167031), mRNA blastn 276 73.1 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
5814314 5814314 PRJNA724011_P_NODE_5585_length_1330_cov_2.739061_g5025_i0 PRJNA724011 5585 1330 2.739061 36.4295113 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 548 1.5099999999999994e-188   NR XP_013398687.1 7574 g5025 i0 63.3 40.6669172932331 431 144 97.2 4 7 1299 38 454 XP_013398687.1 nucleolar GTP-binding protein 1 [Lingula anatina] diamond 54087 550 0.996363636363636 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
7089144 7089144 PRJNA724011_P_NODE_105586_length_243_cov_2.235294_g104563_i0 PRJNA724011 105586 243 2.235294 5.43176442 Lingula anatina 7574 Brachiopoda other_Eukaryota 158 4.51e-34   NTclustered gi|919084308|ref|XM_013523983.1| 7574 g104563 i0 81.538 2.7201646090535 195 32 79 4 15 207 1506 1314 PREDICTED: Lingula anatina unconventional myosin-Ie (LOC106150947), mRNA blastn 661 158 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
7089250 7089250 PRJNA724011_P_NODE_19526_length_667_cov_1.503367_g18520_i0 PRJNA724011 19526 667 1.503367 10.02745789 Lingula anatina 7574 Brachiopoda other_Eukaryota 177 3.64e-47   NR XP_023932407.1 7574 g18520 i0 43 6.95352323838081 223 115 99.9 5 667 2 3474 3685 XP_023932407.1 dynein heavy chain 3, axonemal [Lingula anatina] diamond 4638 177 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
12190065 12190065 PRJNA724011_P_NODE_59190_length_332_cov_1.189189_g58167_i0 PRJNA724011 59190 332 1.189189 3.94810748 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 125 1.4e-30   NR XP_013410348.1 7574 g58167 i0 53.2 11.8463855421687 111 51 99.4 1 330 1 1812 1922 XP_013410348.1 cytoplasmic dynein 2 heavy chain 1 [Lingula anatina] diamond 3933 126 0.992063492063492 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
17288520 17288520 PRJNA724011_P_NODE_2034_length_1991_cov_8.321168_g1747_i0 PRJNA724011 2034 1991 8.321168 165.67445488 Metazoa 33208 Brachiopoda other_Eukaryota 703 1.919999999999999e-247   NR XP_013416763.1 7574 g1747 i0 69.6 11.8839779005525 526 153 79.1 4 146 1720 13 532 XP_013416763.1 T-complex protein 1 subunit beta [Lingula anatina] diamond 23661 707 0.994342291371994 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
18562578 18562578 PRJNA724011_P_NODE_69815_length_301_cov_1.350877_g68792_i0 PRJNA724011 69815 301 1.350877 4.06613977 Lingula anatina 7574 Brachiopoda other_Eukaryota 52.8 0.028   NTclustered gi|919064377|ref|XM_013558363.1| 7574 g68792 i0 96.875 0.212624584717608 32 0 10 1 6 36 1511 1542 PREDICTED: Lingula anatina mediator of RNA polymerase II transcription subunit 7 (LOC106176123), mRNA blastn 64 52.8 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
26798893 26798893 PRJNA724011_P_NODE_32881_length_477_cov_2.316832_g31862_i0 PRJNA724011 32881 477 2.316832 11.05128864 Novocrania anomala 317945 Brachiopoda other_Eukaryota 82 1.85e-16   NR ACD65126.1 317945 g31862 i0 59.5 0.465408805031447 74 28 45.3 1 219 4 10 83 ACD65126.1 putative 60S ribosomal protein RPL23A, partial [Novocrania anomala] diamond 222 82 1 Eukaryota Opisthokonta Metazoa Brachiopoda Craniata Craniida Craniidae Novocrania Novocrania anomala
27915257 27915257 PRJNA724011_P_NODE_55345_length_345_cov_1.694853_g54322_i0 PRJNA724011 55345 345 1.694853 5.84724285 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 163 7.44e-45   NR XP_013399710.1 7574 g54322 i0 63.5 23.0869565217391 115 41 99.1 1 344 3 108 222 XP_013399710.1 V-type proton ATPase catalytic subunit A [Lingula anatina] diamond 7965 163 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28252277 28252277 PRJNA724011_P_NODE_8926_length_1056_cov_2.596134_g8174_i0 PRJNA724011 8926 1056 2.596134 27.41517504 Lingula anatina 7574 Brachiopoda other_Eukaryota 175 1.53e-44   NR XP_023930234.1 7574 g8174 i0 39.3 2.50852272727273 285 106 79.3 8 909 73 527 750 XP_023930234.1 vacuolar protein sorting-associated protein 18 homolog [Lingula anatina] diamond 2649 175 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28262564 28262564 PRJNA724011_P_NODE_7106_length_1185_cov_3.062950_g6452_i0 PRJNA724011 7106 1185 3.06295 36.2959575 Metazoa 33208 Brachiopoda other_Eukaryota 333 5.21e-109   NR XP_013406071.1 7574 g6452 i0 55.1 2.51645569620253 301 126 74.9 6 202 1089 46 342 XP_013406071.1 phytanoyl-CoA dioxygenase, peroxisomal-like [Lingula anatina] diamond 2982 333 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28452316 28452316 PRJNA724011_P_NODE_26586_length_545_cov_4.463983_g25570_i0 PRJNA724011 26586 545 4.463983 24.32870735 Opisthokonta 33154 Brachiopoda other_Eukaryota 50.4 0.00146   NR XP_013408981.1 7574 g25570 i0 32.1 1.53577981651376 131 70 66.6 5 363 1 903 1024 XP_013408981.1 rho GTPase-activating protein 39 isoform X1 [Lingula anatina] diamond 837 50.4 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28631466 28631466 PRJNA724011_P_NODE_79967_length_277_cov_2.166667_g78944_i0 PRJNA724011 79967 277 2.166667 6.00166759 Lingula anatina 7574 Brachiopoda other_Eukaryota 110 1.23e-26   NR XP_013418394.1 7574 g78944 i0 56 2.92418772563177 91 38 98.6 1 3 275 226 314 XP_013418394.1 endoplasmic reticulum-Golgi intermediate compartment protein 3 [Lingula anatina] diamond 810 110 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28978627 28978627 PRJNA724011_P_NODE_26988_length_540_cov_1.535332_g25972_i0 PRJNA724011 26988 540 1.535332 8.2907928 Lingula anatina 7574 Brachiopoda other_Eukaryota 110 2.4399999999999997e-24   NR XP_013405621.1 7574 g25972 i0 36.2 5.95555555555556 196 107 98.9 3 540 7 588 783 XP_013405621.1 tankyrase-like protein isoform X1 [Lingula anatina] diamond 3216 110 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29020804 29020804 PRJNA724011_P_NODE_42588_length_404_cov_3.963746_g41565_i0 PRJNA724011 42588 404 3.963746 16.01353384 Metazoa 33208 Brachiopoda other_Eukaryota 142 2.16e-36   NR XP_013407574.1 7574 g41565 i0 63 11.1683168316832 108 37 78 1 88 402 4 111 XP_013407574.1 kinesin-like protein KIF28P [Lingula anatina] diamond 4512 142 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29336295 29336295 PRJNA724011_P_NODE_74089_length_290_cov_1.981567_g73066_i0 PRJNA724011 74089 290 1.981567 5.7465443 Opisthokonta 33154 Brachiopoda other_Eukaryota 77 5.78e-14   NR XP_013409805.1 7574 g73066 i0 45 1.82068965517241 80 41 79.7 1 231 1 596 675 XP_013409805.1 fidgetin-like protein 1 [Lingula anatina] diamond 528 77 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29494107 29494107 PRJNA724011_P_NODE_42990_length_402_cov_1.854103_g41967_i0 PRJNA724011 42990 402 1.854103 7.45349406 Metazoa 33208 Brachiopoda other_Eukaryota 80.5 1.3e-14   NR XP_013382193.1 7574 g41967 i0 75.6 4.95522388059702 41 10 30.6 0 397 275 510 550 XP_013382193.1 deoxyribodipyrimidine photo-lyase [Lingula anatina] diamond 1992 80.9 0.995055624227441 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29578134 29578134 PRJNA724011_P_NODE_17030_length_726_cov_3.349158_g16043_i0 PRJNA724011 17030 726 3.349158 24.31488708 Lingula anatina 7574 Brachiopoda other_Eukaryota 82.8 1.94e-15   NR XP_013387976.1 7574 g16043 i0 30.5 0.814049586776859 197 108 78.9 6 7 579 5 178 XP_013387976.1 COMM domain-containing protein 1-like [Lingula anatina] diamond 591 82.8 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29714761 29714761 PRJNA724011_P_NODE_5210_length_1374_cov_6.665642_g4677_i0 PRJNA724011 5210 1374 6.665642 91.58592108 Metazoa 33208 Brachiopoda other_Eukaryota 77.4 1.19e-11   NR XP_013411383.2 7574 g4677 i0 34.2 5.1528384279476 114 67 23.1 1 347 664 11 124 XP_013411383.2 zinc finger Ran-binding domain-containing protein 2-like isoform X3 [Lingula anatina] diamond 7080 77.8 0.994858611825193 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30368581 30368581 PRJNA724011_P_NODE_6172_length_1266_cov_3.639564_g5571_i0 PRJNA724011 6172 1266 3.639564 46.07688024 Lingula anatina 7574 Brachiopoda other_Eukaryota 194 1.1e-54   NR XP_013412744.1 7574 g5571 i0 36.1 1.5521327014218 324 184 76.8 4 15 986 12 312 XP_013412744.1 retinol dehydrogenase 13 [Lingula anatina] diamond 1965 194 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30410507 30410507 PRJNA724011_P_NODE_92553_length_252_cov_5.346369_g91530_i0 PRJNA724011 92553 252 5.346369 13.47284988 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 121 8.059999999999999e-31   NR XP_013420449.1 7574 g91530 i0 67.9 11.7380952380952 84 25 97.6 1 249 4 263 346 XP_013420449.1 developmentally-regulated GTP-binding protein 2 [Lingula anatina] diamond 2958 122 0.991803278688525 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30494639 30494639 PRJNA724011_P_NODE_71173_length_297_cov_2.397321_g70150_i0 PRJNA724011 71173 297 2.397321 7.12004337 Lingula anatina 7574 Brachiopoda other_Eukaryota 50.4 1.43e-4   NR XP_013407769.1 7574 g70150 i0 32.6 4.34343434343434 95 54 87.9 4 16 276 145 237 XP_013407769.1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X2 [Lingula anatina] diamond 1290 50.4 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30494663 30494663 PRJNA724011_P_NODE_8673_length_1073_cov_1.616000_g7937_i0 PRJNA724011 8673 1073 1.616 17.33968 Lingula anatina 7574 Brachiopoda other_Eukaryota 151 4.01e-36   NR XP_013392045.1 7574 g7937 i0 37.3 3.12022367194781 365 204 99 10 6 1067 4251 4601 XP_013392045.1 uncharacterized protein LOC106160082, partial [Lingula anatina] diamond 3348 151 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30683997 30683997 PRJNA724011_P_NODE_94193_length_251_cov_0.865169_g93170_i0 PRJNA724011 94193 251 0.865169 2.17157419 Lingula anatina 7574 Brachiopoda other_Eukaryota 88.2 4.27e-18   NR XP_013405621.1 7574 g93170 i0 58 0.824701195219124 69 29 82.5 0 239 33 712 780 XP_013405621.1 tankyrase-like protein isoform X1 [Lingula anatina] diamond 207 88.2 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31294819 31294819 PRJNA724011_P_NODE_36675_length_446_cov_1.128686_g35652_i0 PRJNA724011 36675 446 1.128686 5.03393956 Opisthokonta 33154 Brachiopoda other_Eukaryota 79 7.93e-14   NR XP_013415893.1 7574 g35652 i0 50 3.05381165919283 74 31 45.7 1 221 18 7 80 XP_013415893.1 exosome complex exonuclease RRP44 [Lingula anatina] diamond 1362 79 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31864049 31864049 PRJNA724011_P_NODE_57937_length_336_cov_1.395437_g56914_i0 PRJNA724011 57937 336 1.395437 4.68866832 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 136 7.36e-36   NR XP_013379159.1 7574 g56914 i0 58.2 11 110 46 98.2 0 334 5 191 300 XP_013379159.1 squalene synthase-like [Lingula anatina] diamond 3696 137 0.992700729927007 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32275725 32275725 PRJNA724011_P_NODE_31758_length_487_cov_2.367150_g30739_i0 PRJNA724011 31758 487 2.36715 11.5280205 Metazoa 33208 Brachiopoda other_Eukaryota 80.5 3.7e-14   NR XP_013404916.1 7574 g30739 i0 33.1 4.23203285420945 133 81 80.1 2 484 95 961 1088 XP_013404916.1 replication factor C subunit 1 [Lingula anatina] diamond 2061 80.9 0.995055624227441 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32455241 32455241 PRJNA724011_P_NODE_84779_length_267_cov_3.762887_g83756_i0 PRJNA724011 84779 267 3.762887 10.04690829 Lingula anatina 7574 Brachiopoda other_Eukaryota 132 9.07e-34   NR XP_013395111.1 7574 g83756 i0 74.4 8.32584269662921 82 21 92.1 0 20 265 312 393 XP_013395111.1 ubiquitin-like modifier-activating enzyme ATG7 [Lingula anatina] diamond 2223 132 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32686108 32686108 PRJNA724011_P_NODE_19320_length_671_cov_1.757525_g18314_i0 PRJNA724011 19320 671 1.757525 11.79299275 Metazoa 33208 Brachiopoda other_Eukaryota 108 2.7799999999999996e-23   NR XP_013409031.2 7574 g18314 i0 34.2 3.55886736214605 190 84 84.5 3 572 6 165 314 XP_013409031.2 transmembrane protein 260-like, partial [Lingula anatina] diamond 2388 108 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32739136 32739136 PRJNA724011_P_NODE_96740_length_249_cov_0.875000_g95717_i0 PRJNA724011 96740 249 0.875 2.17875 Lingula anatina 7574 Brachiopoda other_Eukaryota 119 3.19e-29   NR XP_023932795.1 7574 g95717 i0 59.3 2.07228915662651 86 31 98.8 2 248 3 247 332 XP_023932795.1 protein DD3-3-like [Lingula anatina] diamond 516 119 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32833279 32833279 PRJNA724011_P_NODE_12920_length_859_cov_2.562341_g12016_i0 PRJNA724011 12920 859 2.562341 22.01050919 Lingula anatina 7574 Brachiopoda other_Eukaryota 61.2 1e-6   NR XP_013406685.1 7574 g12016 i0 33.6 0.894062863795111 116 54 40.2 4 361 17 40 133 XP_013406685.1 uncharacterized protein LOC106171094 [Lingula anatina] diamond 768 61.2 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32864739 32864739 PRJNA724011_P_NODE_10880_length_949_cov_1.520548_g10039_i0 PRJNA724011 10880 949 1.520548 14.43000052 Lingula anatina 7574 Brachiopoda other_Eukaryota 146 5.73e-35   NR XP_013386865.1 7574 g10039 i0 39 2.87671232876712 228 110 64.2 5 908 300 667 890 XP_013386865.1 inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 isoform X2 [Lingula anatina] diamond 2730 146 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32896121 32896121 PRJNA724011_P_NODE_107860_length_242_cov_0.911243_g106837_i0 PRJNA724011 107860 242 0.911243 2.20520806 Lingula anatina 7574 Brachiopoda other_Eukaryota 45.8 0.00305   NR XP_013414003.1 7574 g106837 i0 40.4 0.582644628099174 47 28 58.3 0 207 67 433 479 XP_013414003.1 dentin sialophosphoprotein-like [Lingula anatina] diamond 141 45.8 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;