RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA724011", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA724011 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12673504 12673504 PRJNA724011_P_NODE_46290_length_384_cov_1.482315_g45267_i0 PRJNA724011 46290 384 1.482315 5.6920896 Betaretrovirus 140052 Viruses Viruses 710 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g45267 i0 100 3.79427083333333 384 0 100 0 1 384 4845 4462 Squirrel monkey retrovirus - HLB, complete genome blastn 1457 710 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
28168044 28168044 PRJNA724011_P_NODE_95105_length_250_cov_0.870056_g94082_i0 PRJNA724011 95105 250 0.870056 2.17514 Lentivirus 11646 Viruses Viruses 154 3.91e-44   NR AGM20473.1 11676 g94082 i0 96.3 90.444 82 3 98.4 0 248 3 166 247 AGM20473.1 pol protein, partial [Human immunodeficiency virus 1] diamond 22611 154 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
30747300 30747300 PRJNA724011_P_NODE_43354_length_400_cov_1.412844_g42331_i0 PRJNA724011 43354 400 1.412844 5.651376 Moloney murine leukemia virus 11801 Viruses Viruses 228 2.7299999999999996e-66   NR NP_057933.2 11801 g42331 i0 93.6 0.9375 125 8 93.8 0 1 375 1212 1336 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 375 228 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31537716 31537716 PRJNA724011_P_NODE_58416_length_334_cov_2.137931_g57393_i0 PRJNA724011 58416 334 2.137931 7.14068954 Moloney murine leukemia virus 11801 Viruses Viruses 219 9.67e-64   NR NP_057933.2 11801 g57393 i0 99.1 1.97604790419162 110 1 98.8 0 332 3 1115 1224 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 660 219 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;