RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA724011" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 8 ✖

bioproject 1

  • PRJNA724011 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7571881 7571881 PRJNA724011_P_NODE_81586_length_274_cov_1.432836_g80563_i0 PRJNA724011 81586 274 1.432836 3.92597064 Cetobacterium 180162 Bacteria Bacteria 501 2.08e-137   NTclustered gi|2865368125|gb|CP122294.1| 188913 g80563 i0 99.635 471.952554744526 274 1 100 0 1 274 279435 279162 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 129315 501 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
13464610 13464610 PRJNA724011_P_NODE_73051_length_293_cov_1.354545_g72028_i0 PRJNA724011 73051 293 1.354545 3.96881685 Cetobacterium somerae 188913 Bacteria Bacteria 490 4.86e-134   NTclustered gi|2666488225|gb|CP143319.1| 188913 g72028 i0 96.928 429.866894197952 293 8 100 1 1 293 1318579 1318870 Cetobacterium somerae strain ceto chromosome, complete genome blastn 125951 490 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
22387832 22387832 PRJNA724011_P_NODE_109358_length_241_cov_0.916667_g108335_i0 PRJNA724011 109358 241 0.916667 2.20916747 unclassified Cetobacterium 2630983 Bacteria Bacteria 161 9.449999999999999e-47   NR WP_047382551.1 2630983 g108335 i0 100 0.983402489626556 79 0 98.3 0 239 3 134 212 WP_047382551.1 MULTISPECIES: 3-deoxy-7-phosphoheptulonate synthase [unclassified Cetobacterium] diamond 237 161 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
26672030 26672030 PRJNA724011_P_NODE_95361_length_250_cov_0.870056_g94338_i0 PRJNA724011 95361 250 0.870056 2.17514 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 156 1.57e-44   NR WP_047393843.1 1339239 g94338 i0 92.8 0.996 83 6 99.6 0 249 1 247 329 WP_047393843.1 SEC-C metal-binding domain-containing protein [Cetobacterium sp. ZOR0034] diamond 249 156 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
27810438 27810438 PRJNA724011_P_NODE_3424_length_1644_cov_7.206238_g3017_i0 PRJNA724011 3424 1644 7.206238 118.47055272 Sebaldella sp. 2819260 Bacteria Bacteria 58.9 3.95e-5   NR MBP9479720.1 2819260 g3017 i0 20.9 0.489051094890511 268 193 48.4 3 1342 548 45 296 MBP9479720.1 MATE family efflux transporter [Sebaldella sp.] diamond 804 58.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sebaldella Sebaldella sp.
28062821 28062821 PRJNA724011_P_NODE_62945_length_320_cov_1.696356_g61922_i0 PRJNA724011 62945 320 1.696356 5.4283392 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 196 2.54e-57   NR WP_047381739.1 1340502 g61922 i0 98.1 0.984375 105 2 98.4 0 318 4 127 231 WP_047381739.1 GTPase HflX [Cetobacterium sp. ZWU0022] diamond 315 196 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
29199754 29199754 PRJNA724011_P_NODE_62449_length_321_cov_3.407258_g61426_i0 PRJNA724011 62449 321 3.407258 10.93729818 Fusobacterium sp. 68766 Bacteria Bacteria 44.7 0.0186   NR WP_101474947.1 68766 g61426 i0 38.2 0.514018691588785 55 33 51.4 1 110 274 116 169 WP_101474947.1 AAA family ATPase [Fusobacterium sp.] diamond 165 44.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
31042402 31042402 PRJNA724011_P_NODE_84815_length_267_cov_2.541237_g83792_i0 PRJNA724011 84815 267 2.541237 6.78510279 Bacteria 2 Bacteria Bacteria 91.3 1.64e-20   NR WP_134113092.1 1627895 g83792 i0 47.1 2.9438202247191 87 45 97.8 1 262 2 58 143 WP_134113092.1 adenylate kinase [Hypnocyclicus thermotrophus] diamond 786 92 0.992391304347826 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Hypnocyclicus Hypnocyclicus thermotrophus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;