RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA724011", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 9 ✖

tax_kingdom 1

  • Bacillati · 9 ✖

bioproject 1

  • PRJNA724011 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7089712 7089712 PRJNA724011_P_NODE_90366_length_257_cov_1.255435_g89343_i0 PRJNA724011 90366 257 1.255435 3.22646795 Spiroplasma corruscae 216934 Bacteria Bacteria 52.8 0.023   NTclustered gi|1226105578|gb|CP022535.1| 216934 g89343 i0 100 0.108949416342412 28 0 11 0 193 220 663465 663438 Spiroplasma corruscae strain EC-1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma corruscae
10915089 10915089 PRJNA724011_P_NODE_98869_length_248_cov_0.880000_g97846_i0 PRJNA724011 98869 248 0.88 2.1824 Candidatus Phytoplasma solani 69896 Bacteria Bacteria 54.7 0.006   NTclustered gi|2741905208|gb|CP155828.1| 69896 g97846 i0 92.308 0.314516129032258 39 1 15 2 30 66 152991 152953 Candidatus Phytoplasma solani strain GOE chromosome, complete genome blastn 78 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma solani
28820364 28820364 PRJNA724011_P_NODE_74828_length_289_cov_1.069444_g73805_i0 PRJNA724011 74828 289 1.069444 3.09069316 Mycoplasmopsis columboralis 171282 Bacteria Bacteria 57.4 4.01e-7   NR WP_036434566.1 171282 g73805 i0 58.7 0.477508650519031 46 19 47.8 0 279 142 29 74 WP_036434566.1 ankyrin repeat domain-containing protein [Mycoplasmopsis columboralis] diamond 138 57.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis columboralis
28978645 28978645 PRJNA724011_P_NODE_41948_length_409_cov_0.913690_g40925_i0 PRJNA724011 41948 409 0.91369 3.7369921 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 96.3 1.87e-20   NR HHT82208.1 1898209 g40925 i0 43.2 2.57457212713936 125 59 85.1 3 409 62 29 150 HHT82208.1 NADP-dependent malic enzyme [Acholeplasmataceae bacterium] diamond 1053 96.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
29073434 29073434 PRJNA724011_P_NODE_53208_length_353_cov_1.371429_g52185_i0 PRJNA724011 53208 353 1.371429 4.84114437 Mycoplasma sp. 2108 Bacteria Bacteria 92 4.83e-21   NR MDI4567532.1 2108 g52185 i0 49.4 0.756373937677054 89 44 75.6 1 268 2 18 105 MDI4567532.1 30S ribosomal protein S9 [Mycoplasma sp.] diamond 267 92 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp.
29272907 29272907 PRJNA724011_P_NODE_9789_length_1007_cov_8.444325_g8997_i0 PRJNA724011 9789 1007 8.444325 85.03435275 Bacillati 1783272 Bacteria Bacteria 49.7 0.0122   NR MCI5553021.1 2231116 g8997 i0 26.4 0.953326713008937 163 103 48.6 4 50 538 141 286 MCI5553021.1 rhomboid family intramembrane serine protease [Mycoplasmatota bacterium] diamond 960 49.7 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
30620781 30620781 PRJNA724011_P_NODE_5393_length_1350_cov_4.048551_g4848_i0 PRJNA724011 5393 1350 4.048551 54.6554385 Tenericutes bacterium GWA2_35_7 1802344 Bacteria Bacteria 53.9 6.44e-4   NR OHE25112.1 1802344 g4848 i0 27.7 0.328888888888889 148 99 32.9 4 902 459 46 185 OHE25112.1 MAG: hypothetical protein A2Z84_06490 [Tenericutes bacterium GWA2_35_7] diamond 444 53.9 1 Bacteria   Bacillati Mycoplasmatota         Tenericutes bacterium GWA2_35_7
30694455 30694455 PRJNA724011_P_NODE_79853_length_278_cov_1.102439_g78830_i0 PRJNA724011 79853 278 1.102439 3.06478042 Bacteria 2 Bacteria Bacteria 43.9 0.00741   NR SYV95512.1 2123 g78830 i0 50 1.80215827338129 46 23 49.6 0 2 139 80 125 SYV95512.1 Uncharacterised protein [Mycoplasma putrefaciens] diamond 501 43.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma putrefaciens
31000165 31000165 PRJNA724011_P_NODE_88374_length_260_cov_2.657754_g87351_i0 PRJNA724011 88374 260 2.657754 6.9101604 Mycoplasma sp. 2108 Bacteria Bacteria 62 6.28e-9   NR MCR8612997.1 2108 g87351 i0 38.8 0.923076923076923 80 44 92.3 2 255 16 65 139 MCR8612997.1 serine/threonine protein kinase [Mycoplasma sp.] diamond 240 62 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;