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contig_metadata

17 rows where bioproject = "PRJNA724011", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 17 ✖

tax_clade 1

  • delta/epsilon subdivisions · 17 ✖

bioproject 1

  • PRJNA724011 · 17 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17288983 17288983 PRJNA724011_P_NODE_92294_length_253_cov_1.700000_g91271_i0 PRJNA724011 92294 253 1.7 4.301 uncultured delta proteobacterium 34034 Bacteria Bacteria 52.8 0.023   NTclustered gi|2874253659|emb|OY969087.1| 34034 g91271 i0 100 0.221343873517787 28 0 11 0 55 82 4339352 4339325 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 56 52.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
26745625 26745625 PRJNA724011_P_NODE_103261_length_245_cov_0.895349_g102238_i0 PRJNA724011 103261 245 0.895349 2.19360505 Myxococcota 2818505 Bacteria Bacteria 111 2.36e-27   NR WP_141200447.1 2292766 g102238 i0 67.9 3.93061224489796 81 24 99.2 1 3 245 25 103 WP_141200447.1 fumarylacetoacetate hydrolase family protein [Persicimonas caeni] diamond 963 111 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
26767333 26767333 PRJNA724011_P_NODE_74901_length_288_cov_3.083721_g73878_i0 PRJNA724011 74901 288 3.083721 8.88111648 Deltaproteobacteria bacterium RIFCSPLOWO2_ 2026735 Bacteria Bacteria 48.1 7.64e-4   NR OGQ48417.1 1797880 g73878 i0 36.1 0.75 72 46 75 0 67 282 139 210 OGQ48417.1 MAG: hypothetical protein A3I09_04960 [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_47_10] diamond 216 48.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_47_10
27020559 27020559 PRJNA724011_P_NODE_75962_length_286_cov_1.652582_g74939_i0 PRJNA724011 75962 286 1.652582 4.72638452 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_ 2026735 Bacteria Bacteria 86.7 5.1e-19   NR PIR19918.1 1973975 g74939 i0 63.1 2.74825174825175 65 23 68.2 1 15 209 102 165 PIR19918.1 MAG: hypothetical protein COV45_08025 [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16] diamond 786 86.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16
27020591 27020591 PRJNA724011_P_NODE_94342_length_251_cov_0.865169_g93319_i0 PRJNA724011 94342 251 0.865169 2.17157419 Persicimonas caeni 2292766 Bacteria Bacteria 86.3 2.85e-18   NR WP_141199462.1 2292766 g93319 i0 50.6 1.93625498007968 81 40 96.8 0 251 9 15 95 WP_141199462.1 lysophospholipid acyltransferase family protein [Persicimonas caeni] diamond 486 86.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
28252265 28252265 PRJNA724011_P_NODE_82026_length_273_cov_1.530000_g81003_i0 PRJNA724011 82026 273 1.53 4.1769 SAR324 cluster bacterium 2024889 Bacteria Bacteria 53.1 1.17e-5   NR MBF0277046.1 2024889 g81003 i0 37.1 1.52747252747253 70 42 75.8 2 254 48 392 460 MBF0277046.1 pentapeptide repeat-containing protein [SAR324 cluster bacterium] diamond 417 53.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
28283638 28283638 PRJNA724011_P_NODE_47666_length_377_cov_1.766447_g46643_i0 PRJNA724011 47666 377 1.766447 6.65950519 Bradymonadales bacterium 2099667 Bacteria Bacteria 105 4.68e-24   NR MBN1947766.1 2099667 g46643 i0 45.6 0.907161803713528 114 62 90.7 0 351 10 80 193 MBN1947766.1 CDP-alcohol phosphatidyltransferase family protein [Bradymonadales bacterium] diamond 342 105 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
28599800 28599800 PRJNA724011_P_NODE_49107_length_371_cov_0.899329_g48084_i0 PRJNA724011 49107 371 0.899329 3.33651059 Deltaproteobacteria bacterium GWA2_38_16 1797802 Bacteria Bacteria 53.5 2.64e-5   NR OGP06100.1 1797802 g48084 i0 33 0.83288409703504 103 65 80.1 2 367 71 494 596 OGP06100.1 MAG: hypothetical protein A2Z91_05935 [Deltaproteobacteria bacterium GWA2_38_16] diamond 309 53.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium GWA2_38_16
28662947 28662947 PRJNA724011_P_NODE_887_length_2675_cov_21.204458_g740_i0 PRJNA724011 887 2675 21.204458 567.2192515 Microvenator marinus 2600177 Bacteria Bacteria 55.8 9.27e-5   NR WP_146958514.1 2600177 g740 i0 25.7 0.36785046728972 187 123 20.6 5 2641 2090 3 176 WP_146958514.1 lipocalin family protein [Microvenator marinus] diamond 984 55.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
29451809 29451809 PRJNA724011_P_NODE_59170_length_332_cov_1.189189_g58147_i0 PRJNA724011 59170 332 1.189189 3.94810748 Bradymonadales bacterium 2099667 Bacteria Bacteria 104 1.8899999999999994e-23   NR MBN1944337.1 2099667 g58147 i0 50 1.01204819277108 112 54 99.4 1 332 3 106 217 MBN1944337.1 NAD-dependent dihydropyrimidine dehydrogenase subunit PreA [Bradymonadales bacterium] diamond 336 104 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
29641291 29641291 PRJNA724011_P_NODE_94070_length_251_cov_0.865169_g93047_i0 PRJNA724011 94070 251 0.865169 2.17157419 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_ 2026735 Bacteria Bacteria 97.8 1.73e-21   NR PIR21022.1 1973975 g93047 i0 57.3 8.8804780876494 82 35 98 0 4 249 569 650 PIR21022.1 MAG: elongation factor G [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16] diamond 2229 97.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16
30494544 30494544 PRJNA724011_P_NODE_13553_length_836_cov_1.212320_g12631_i0 PRJNA724011 13553 836 1.21232 10.1349952 Bradymonadales bacterium 2099667 Bacteria Bacteria 362 9.4e-116   NR MBN1944337.1 2099667 g12631 i0 63.7 0.997607655502392 278 101 99.8 0 2 835 525 802 MBN1944337.1 NAD-dependent dihydropyrimidine dehydrogenase subunit PreA [Bradymonadales bacterium] diamond 834 362 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
32233768 32233768 PRJNA724011_P_NODE_44478_length_393_cov_3.859375_g43455_i0 PRJNA724011 44478 393 3.859375 15.16734375 delta proteobacterium ML8_F1 1775671 Bacteria Bacteria 82.8 1.81e-16   NR OPL09393.1 1775671 g43455 i0 47.2 0.824427480916031 108 32 82.4 1 347 24 57 139 OPL09393.1 MAG: 2-deoxyribose-5-phosphate aldolase [delta proteobacterium ML8_F1] diamond 324 82.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       delta proteobacterium ML8_F1
32423368 32423368 PRJNA724011_P_NODE_5099_length_1388_cov_3.598479_g4570_i0 PRJNA724011 5099 1388 3.598479 49.94688852 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 2013741 Bacteria Bacteria 151 6.32e-37   NR PKN55183.1 2013741 g4570 i0 37.3 0.585734870317003 271 134 52.5 7 1035 307 170 432 PKN55183.1 MAG: hypothetical protein CVU56_22585 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 813 151 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
32623220 32623220 PRJNA724011_P_NODE_56160_length_342_cov_1.713755_g55137_i0 PRJNA724011 56160 342 1.713755 5.8610421 Bacteria 2 Bacteria Bacteria 50.4 3.24e-5   NR PKN77812.1 2013736 g55137 i0 34 1.79824561403509 94 45 79.8 3 20 292 18 97 PKN77812.1 MAG: thioredoxin [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-1] diamond 615 50.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-1
32780586 32780586 PRJNA724011_P_NODE_88140_length_261_cov_1.446809_g87117_i0 PRJNA724011 88140 261 1.446809 3.77617149 Bacteria 2 Bacteria Bacteria 95.5 1.19e-20   NR OGP70449.1 1797833 g87117 i0 50.6 7.54022988505747 79 39 90.8 0 261 25 437 515 OGP70449.1 MAG: NAD-dependent malic enzyme [Deltaproteobacteria bacterium RBG_13_60_28] diamond 1968 95.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_60_28
32906551 32906551 PRJNA724011_P_NODE_105100_length_244_cov_0.900585_g104077_i0 PRJNA724011 105100 244 0.900585 2.1974274 Myxococcota 2818505 Bacteria Bacteria 100 1.83e-22   NR OGP57184.1 1797827 g104077 i0 62.5 6.77459016393443 80 29 98.4 1 4 243 194 272 OGP57184.1 MAG: hypothetical protein A2V65_03520 [Deltaproteobacteria bacterium RBG_13_49_15] diamond 1653 100 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_49_15

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;